Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 6651 | 0.66 | 0.940486 |
Target: 5'- gCGUGGGggGGggGgGAGG-CCugAa- -3' miRNA: 3'- gGCGCCCa-UCuuCgCUCCuGGugUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 122748 | 0.66 | 0.934267 |
Target: 5'- cUCGCGGGUccGGAaccgucggacgucgAGgGAGGacGCCcCAUCg -3' miRNA: 3'- -GGCGCCCA--UCU--------------UCgCUCC--UGGuGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 129496 | 0.66 | 0.925535 |
Target: 5'- gUGCGGGUAGguGgGAGcauaACCACAa- -3' miRNA: 3'- gGCGCCCAUCuuCgCUCc---UGGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 126962 | 0.66 | 0.940487 |
Target: 5'- gCGUGGGggGGggGgGAGG-CCugAa- -3' miRNA: 3'- gGCGCCCa-UCuuCgCUCCuGGugUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 137327 | 0.66 | 0.930754 |
Target: 5'- gCCgGCGGGUcGAGG-GaAGGGCC-CGUCc -3' miRNA: 3'- -GG-CGCCCAuCUUCgC-UCCUGGuGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 130563 | 0.66 | 0.925535 |
Target: 5'- gCCGaGGGUAGgcGCaGAGGAaaUCGCgGUCg -3' miRNA: 3'- -GGCgCCCAUCuuCG-CUCCU--GGUG-UAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 129736 | 0.66 | 0.925535 |
Target: 5'- aUGUGGGggggGGggGCGggaAGGAUaACGUCu -3' miRNA: 3'- gGCGCCCa---UCuuCGC---UCCUGgUGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 96906 | 0.66 | 0.925535 |
Target: 5'- -aGCGGG-AGGAGCGgcaauAGGugCAUAa- -3' miRNA: 3'- ggCGCCCaUCUUCGC-----UCCugGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 133400 | 0.66 | 0.930242 |
Target: 5'- cCCGCGGGcugagugcaccugUGGcGGCGGGaGGCUGCGg- -3' miRNA: 3'- -GGCGCCC-------------AUCuUCGCUC-CUGGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 214 | 0.66 | 0.930242 |
Target: 5'- cCCGCGGGcugagugcaccugUGGcGGCGGGaGGCUGCGg- -3' miRNA: 3'- -GGCGCCC-------------AUCuUCGCUC-CUGGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 154851 | 0.66 | 0.925535 |
Target: 5'- aUCGgGGGggggggGGggGgGGGGGCgCGgGUCg -3' miRNA: 3'- -GGCgCCCa-----UCuuCgCUCCUG-GUgUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 4118 | 0.66 | 0.925535 |
Target: 5'- gUGCGGGUAGguGgGAGcauaACCACAa- -3' miRNA: 3'- gGCGCCCAUCuuCgCUCc---UGGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 3051 | 0.66 | 0.925535 |
Target: 5'- gCCGaGGGUAGgcGCaGAGGAaaUCGCgGUCg -3' miRNA: 3'- -GGCgCCCAUCuuCG-CUCCU--GGUG-UAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 153721 | 0.66 | 0.935737 |
Target: 5'- gUGUGGGUGGGuGGCGAaGGugCugAg- -3' miRNA: 3'- gGCGCCCAUCU-UCGCU-CCugGugUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 160011 | 0.66 | 0.930754 |
Target: 5'- gCCgGCGGGUcGAGG-GaAGGGCC-CGUCc -3' miRNA: 3'- -GG-CGCCCAuCUUCgC-UCCUGGuGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 1038 | 0.67 | 0.895935 |
Target: 5'- uUCGCGGGgGGcuGGCGGaGACCGCcUCu -3' miRNA: 3'- -GGCGCCCaUCu-UCGCUcCUGGUGuAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 128172 | 0.67 | 0.914393 |
Target: 5'- aUGCGGGgcGAugAGCGGGuauuuaGGCCACGa- -3' miRNA: 3'- gGCGCCCauCU--UCGCUC------CUGGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 135370 | 0.67 | 0.902317 |
Target: 5'- gUCGgGGGgGGggGCGGGGGgagUCAC-UCg -3' miRNA: 3'- -GGCgCCCaUCuuCGCUCCU---GGUGuAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 141056 | 0.67 | 0.920081 |
Target: 5'- cCCGCGGGUucggaacGggGCGAaccgagcccuauGGAuccCCGCAaaUCa -3' miRNA: 3'- -GGCGCCCAu------CuuCGCU------------CCU---GGUGU--AG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 161887 | 0.67 | 0.895935 |
Target: 5'- gUGCGGaucGGggGgGAGGACUACGg- -3' miRNA: 3'- gGCGCCca-UCuuCgCUCCUGGUGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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