Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 135370 | 0.67 | 0.902317 |
Target: 5'- gUCGgGGGgGGggGCGGGGGgagUCAC-UCg -3' miRNA: 3'- -GGCgCCCaUCuuCGCUCCU---GGUGuAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 132575 | 0.67 | 0.895935 |
Target: 5'- uUCGCGGGgGGcuGGCGGaGACCGCcUCu -3' miRNA: 3'- -GGCGCCCaUCu-UCGCUcCUGGUGuAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 161887 | 0.67 | 0.895935 |
Target: 5'- gUGCGGaucGGggGgGAGGACUACGg- -3' miRNA: 3'- gGCGCCca-UCuuCgCUCCUGGUGUag -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 135451 | 0.67 | 0.895935 |
Target: 5'- gUGCGGaucGGggGgGAGGACUACGg- -3' miRNA: 3'- gGCGCCca-UCuuCgCUCCUGGUGUag -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 1038 | 0.67 | 0.895935 |
Target: 5'- uUCGCGGGgGGcuGGCGGaGACCGCcUCu -3' miRNA: 3'- -GGCGCCCaUCu-UCGCUcCUGGUGuAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 146266 | 0.67 | 0.891996 |
Target: 5'- gCGCGGGUAGAAaCGGGccGauuaguuuuaucuucGCCGCGUCc -3' miRNA: 3'- gGCGCCCAUCUUcGCUC--C---------------UGGUGUAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 142485 | 0.68 | 0.860707 |
Target: 5'- aUCGgGGGggggGGggGgGGGGGCgCGgGUCg -3' miRNA: 3'- -GGCgCCCa---UCuuCgCUCCUG-GUgUAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 10521 | 0.68 | 0.856126 |
Target: 5'- gCCGCGGGUGcGggGCcggGGGGAaagucggggggcgacCCGCGa- -3' miRNA: 3'- -GGCGCCCAU-CuuCG---CUCCU---------------GGUGUag -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 123093 | 0.68 | 0.856126 |
Target: 5'- gCCGCGGGUGcGggGCcggGGGGAaagucggggggcgacCCGCGa- -3' miRNA: 3'- -GGCGCCCAU-CuuCG---CUCCU---------------GGUGUag -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 157691 | 0.69 | 0.819577 |
Target: 5'- -gGCGGGgaggGGGAGCGGgcacucguucugcGGGCCcCAUCc -3' miRNA: 3'- ggCGCCCa---UCUUCGCU-------------CCUGGuGUAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 139647 | 0.69 | 0.819577 |
Target: 5'- -gGCGGGgaggGGGAGCGGgcacucguucugcGGGCCcCAUCc -3' miRNA: 3'- ggCGCCCa---UCUUCGCU-------------CCUGGuGUAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 10944 | 0.7 | 0.747689 |
Target: 5'- gCCGaCGGGUGGAAGgGggauGGGuACCgaggGCAUCg -3' miRNA: 3'- -GGC-GCCCAUCUUCgC----UCC-UGG----UGUAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 122670 | 0.7 | 0.747689 |
Target: 5'- gCCGaCGGGUGGAAGgGggauGGGuACCgaggGCAUCg -3' miRNA: 3'- -GGC-GCCCAUCUUCgC----UCC-UGG----UGUAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 33694 | 0.71 | 0.708643 |
Target: 5'- -aGCGGGUGu-GGCGAGGGCCcCGa- -3' miRNA: 3'- ggCGCCCAUcuUCGCUCCUGGuGUag -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 158042 | 0.72 | 0.678657 |
Target: 5'- aCCGCGGGgGGAuucaGAGGGCgGCGUUc -3' miRNA: 3'- -GGCGCCCaUCUucg-CUCCUGgUGUAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 139296 | 0.72 | 0.678657 |
Target: 5'- aCCGCGGGgGGAuucaGAGGGCgGCGUUc -3' miRNA: 3'- -GGCGCCCaUCUucg-CUCCUGgUGUAG- -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 101675 | 0.72 | 0.668575 |
Target: 5'- gCGUGGGUAGAGGaCGGGGGCgAgAc- -3' miRNA: 3'- gGCGCCCAUCUUC-GCUCCUGgUgUag -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 157038 | 0.72 | 0.658464 |
Target: 5'- -aGCGGGUGcGAGGCGGGGGgCugAa- -3' miRNA: 3'- ggCGCCCAU-CUUCGCUCCUgGugUag -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 140300 | 0.72 | 0.658464 |
Target: 5'- -aGCGGGUGcGAGGCGGGGGgCugAa- -3' miRNA: 3'- ggCGCCCAU-CUUCGCUCCUgGugUag -5' |
|||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 68301 | 0.75 | 0.489367 |
Target: 5'- uCCGCGGGUGGAucgacucccgcaGGCGGuGuCUACAUCg -3' miRNA: 3'- -GGCGCCCAUCU------------UCGCUcCuGGUGUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home