miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9734 5' -55.5 NC_002577.1 + 214 0.66 0.930242
Target:  5'- cCCGCGGGcugagugcaccugUGGcGGCGGGaGGCUGCGg- -3'
miRNA:   3'- -GGCGCCC-------------AUCuUCGCUC-CUGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 1038 0.67 0.895935
Target:  5'- uUCGCGGGgGGcuGGCGGaGACCGCcUCu -3'
miRNA:   3'- -GGCGCCCaUCu-UCGCUcCUGGUGuAG- -5'
9734 5' -55.5 NC_002577.1 + 3051 0.66 0.925535
Target:  5'- gCCGaGGGUAGgcGCaGAGGAaaUCGCgGUCg -3'
miRNA:   3'- -GGCgCCCAUCuuCG-CUCCU--GGUG-UAG- -5'
9734 5' -55.5 NC_002577.1 + 4118 0.66 0.925535
Target:  5'- gUGCGGGUAGguGgGAGcauaACCACAa- -3'
miRNA:   3'- gGCGCCCAUCuuCgCUCc---UGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 5442 0.67 0.914393
Target:  5'- aUGCGGGgcGAugAGCGGGuauuuaGGCCACGa- -3'
miRNA:   3'- gGCGCCCauCU--UCGCUC------CUGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 6651 0.66 0.940486
Target:  5'- gCGUGGGggGGggGgGAGG-CCugAa- -3'
miRNA:   3'- gGCGCCCa-UCuuCgCUCCuGGugUag -5'
9734 5' -55.5 NC_002577.1 + 10521 0.68 0.856126
Target:  5'- gCCGCGGGUGcGggGCcggGGGGAaagucggggggcgacCCGCGa- -3'
miRNA:   3'- -GGCGCCCAU-CuuCG---CUCCU---------------GGUGUag -5'
9734 5' -55.5 NC_002577.1 + 10944 0.7 0.747689
Target:  5'- gCCGaCGGGUGGAAGgGggauGGGuACCgaggGCAUCg -3'
miRNA:   3'- -GGC-GCCCAUCUUCgC----UCC-UGG----UGUAG- -5'
9734 5' -55.5 NC_002577.1 + 33694 0.71 0.708643
Target:  5'- -aGCGGGUGu-GGCGAGGGCCcCGa- -3'
miRNA:   3'- ggCGCCCAUcuUCGCUCCUGGuGUag -5'
9734 5' -55.5 NC_002577.1 + 68301 0.75 0.489367
Target:  5'- uCCGCGGGUGGAucgacucccgcaGGCGGuGuCUACAUCg -3'
miRNA:   3'- -GGCGCCCAUCU------------UCGCUcCuGGUGUAG- -5'
9734 5' -55.5 NC_002577.1 + 77981 1.12 0.002481
Target:  5'- uCCGCGGGUAGAAGCGAGGACCACAUCa -3'
miRNA:   3'- -GGCGCCCAUCUUCGCUCCUGGUGUAG- -5'
9734 5' -55.5 NC_002577.1 + 81263 0.67 0.907866
Target:  5'- gCCGCGGGcgUGGcgcAGCacGGGGACCguuuagauggucuACAUCg -3'
miRNA:   3'- -GGCGCCC--AUCu--UCG--CUCCUGG-------------UGUAG- -5'
9734 5' -55.5 NC_002577.1 + 96906 0.66 0.925535
Target:  5'- -aGCGGG-AGGAGCGgcaauAGGugCAUAa- -3'
miRNA:   3'- ggCGCCCaUCUUCGC-----UCCugGUGUag -5'
9734 5' -55.5 NC_002577.1 + 101675 0.72 0.668575
Target:  5'- gCGUGGGUAGAGGaCGGGGGCgAgAc- -3'
miRNA:   3'- gGCGCCCAUCUUC-GCUCCUGgUgUag -5'
9734 5' -55.5 NC_002577.1 + 122670 0.7 0.747689
Target:  5'- gCCGaCGGGUGGAAGgGggauGGGuACCgaggGCAUCg -3'
miRNA:   3'- -GGC-GCCCAUCUUCgC----UCC-UGG----UGUAG- -5'
9734 5' -55.5 NC_002577.1 + 122748 0.66 0.934267
Target:  5'- cUCGCGGGUccGGAaccgucggacgucgAGgGAGGacGCCcCAUCg -3'
miRNA:   3'- -GGCGCCCA--UCU--------------UCgCUCC--UGGuGUAG- -5'
9734 5' -55.5 NC_002577.1 + 123093 0.68 0.856126
Target:  5'- gCCGCGGGUGcGggGCcggGGGGAaagucggggggcgacCCGCGa- -3'
miRNA:   3'- -GGCGCCCAU-CuuCG---CUCCU---------------GGUGUag -5'
9734 5' -55.5 NC_002577.1 + 126962 0.66 0.940487
Target:  5'- gCGUGGGggGGggGgGAGG-CCugAa- -3'
miRNA:   3'- gGCGCCCa-UCuuCgCUCCuGGugUag -5'
9734 5' -55.5 NC_002577.1 + 128172 0.67 0.914393
Target:  5'- aUGCGGGgcGAugAGCGGGuauuuaGGCCACGa- -3'
miRNA:   3'- gGCGCCCauCU--UCGCUC------CUGGUGUag -5'
9734 5' -55.5 NC_002577.1 + 129496 0.66 0.925535
Target:  5'- gUGCGGGUAGguGgGAGcauaACCACAa- -3'
miRNA:   3'- gGCGCCCAUCuuCgCUCc---UGGUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.