Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9734 | 5' | -55.5 | NC_002577.1 | + | 140300 | 0.72 | 0.658464 |
Target: 5'- -aGCGGGUGcGAGGCGGGGGgCugAa- -3' miRNA: 3'- ggCGCCCAU-CUUCGCUCCUgGugUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 133400 | 0.66 | 0.930242 |
Target: 5'- cCCGCGGGcugagugcaccugUGGcGGCGGGaGGCUGCGg- -3' miRNA: 3'- -GGCGCCC-------------AUCuUCGCUC-CUGGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 122748 | 0.66 | 0.934267 |
Target: 5'- cUCGCGGGUccGGAaccgucggacgucgAGgGAGGacGCCcCAUCg -3' miRNA: 3'- -GGCGCCCA--UCU--------------UCgCUCC--UGGuGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 126962 | 0.66 | 0.940487 |
Target: 5'- gCGUGGGggGGggGgGAGG-CCugAa- -3' miRNA: 3'- gGCGCCCa-UCuuCgCUCCuGGugUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 139647 | 0.69 | 0.819577 |
Target: 5'- -gGCGGGgaggGGGAGCGGgcacucguucugcGGGCCcCAUCc -3' miRNA: 3'- ggCGCCCa---UCUUCGCU-------------CCUGGuGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 10521 | 0.68 | 0.856126 |
Target: 5'- gCCGCGGGUGcGggGCcggGGGGAaagucggggggcgacCCGCGa- -3' miRNA: 3'- -GGCGCCCAU-CuuCG---CUCCU---------------GGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 1038 | 0.67 | 0.895935 |
Target: 5'- uUCGCGGGgGGcuGGCGGaGACCGCcUCu -3' miRNA: 3'- -GGCGCCCaUCu-UCGCUcCUGGUGuAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 135451 | 0.67 | 0.895935 |
Target: 5'- gUGCGGaucGGggGgGAGGACUACGg- -3' miRNA: 3'- gGCGCCca-UCuuCgCUCCUGGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 96906 | 0.66 | 0.925535 |
Target: 5'- -aGCGGG-AGGAGCGgcaauAGGugCAUAa- -3' miRNA: 3'- ggCGCCCaUCUUCGC-----UCCugGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 154851 | 0.66 | 0.925535 |
Target: 5'- aUCGgGGGggggggGGggGgGGGGGCgCGgGUCg -3' miRNA: 3'- -GGCgCCCa-----UCuuCgCUCCUG-GUgUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 129496 | 0.66 | 0.925535 |
Target: 5'- gUGCGGGUAGguGgGAGcauaACCACAa- -3' miRNA: 3'- gGCGCCCAUCuuCgCUCc---UGGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 156282 | 0.67 | 0.920081 |
Target: 5'- cCCGCGGGUucggaacGggGCGAaccgagcccuauGGAuccCCGCAaaUCa -3' miRNA: 3'- -GGCGCCCAu------CuuCGCU------------CCU---GGUGU--AG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 139296 | 0.72 | 0.678657 |
Target: 5'- aCCGCGGGgGGAuucaGAGGGCgGCGUUc -3' miRNA: 3'- -GGCGCCCaUCUucg-CUCCUGgUGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 129736 | 0.66 | 0.925535 |
Target: 5'- aUGUGGGggggGGggGCGggaAGGAUaACGUCu -3' miRNA: 3'- gGCGCCCa---UCuuCGC---UCCUGgUGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 33694 | 0.71 | 0.708643 |
Target: 5'- -aGCGGGUGu-GGCGAGGGCCcCGa- -3' miRNA: 3'- ggCGCCCAUcuUCGCUCCUGGuGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 128172 | 0.67 | 0.914393 |
Target: 5'- aUGCGGGgcGAugAGCGGGuauuuaGGCCACGa- -3' miRNA: 3'- gGCGCCCauCU--UCGCUC------CUGGUGUag -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 130563 | 0.66 | 0.925535 |
Target: 5'- gCCGaGGGUAGgcGCaGAGGAaaUCGCgGUCg -3' miRNA: 3'- -GGCgCCCAUCuuCG-CUCCU--GGUG-UAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 137327 | 0.66 | 0.930754 |
Target: 5'- gCCgGCGGGUcGAGG-GaAGGGCC-CGUCc -3' miRNA: 3'- -GG-CGCCCAuCUUCgC-UCCUGGuGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 122670 | 0.7 | 0.747689 |
Target: 5'- gCCGaCGGGUGGAAGgGggauGGGuACCgaggGCAUCg -3' miRNA: 3'- -GGC-GCCCAUCUUCgC----UCC-UGG----UGUAG- -5' |
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9734 | 5' | -55.5 | NC_002577.1 | + | 146266 | 0.67 | 0.891996 |
Target: 5'- gCGCGGGUAGAAaCGGGccGauuaguuuuaucuucGCCGCGUCc -3' miRNA: 3'- gGCGCCCAUCUUcGCUC--C---------------UGGUGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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