miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9735 3' -50.4 NC_002577.1 + 153488 0.66 0.998278
Target:  5'- aGCGCuuGCGGGAG-GAAccagUUGUCGguuuuuuauGCGGg -3'
miRNA:   3'- -CGUG--CGCCCUUgCUUa---AACAGU---------CGCC- -5'
9735 3' -50.4 NC_002577.1 + 123094 0.66 0.998083
Target:  5'- cGC-CGCGGGuGCGGGgccggggggaaaGUCGGgGGg -3'
miRNA:   3'- -CGuGCGCCCuUGCUUaaa---------CAGUCgCC- -5'
9735 3' -50.4 NC_002577.1 + 157059 0.66 0.998083
Target:  5'- gGCGCGCGGGGgcucgcgacggcgcgACGGAgccGUCcucCGGa -3'
miRNA:   3'- -CGUGCGCCCU---------------UGCUUaaaCAGuc-GCC- -5'
9735 3' -50.4 NC_002577.1 + 10520 0.66 0.998083
Target:  5'- cGC-CGCGGGuGCGGGgccggggggaaaGUCGGgGGg -3'
miRNA:   3'- -CGuGCGCCCuUGCUUaaa---------CAGUCgCC- -5'
9735 3' -50.4 NC_002577.1 + 140279 0.66 0.998083
Target:  5'- gGCGCGCGGGGgcucgcgacggcgcgACGGAgccGUCcucCGGa -3'
miRNA:   3'- -CGUGCGCCCU---------------UGCUUaaaCAGuc-GCC- -5'
9735 3' -50.4 NC_002577.1 + 6574 0.66 0.997554
Target:  5'- -uGCGCGGGGAgUGGGg----CGGCGGu -3'
miRNA:   3'- cgUGCGCCCUU-GCUUaaacaGUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 127040 0.66 0.997554
Target:  5'- -uGCGCGGGGAgUGGGg----CGGCGGu -3'
miRNA:   3'- cgUGCGCCCUU-GCUUaaacaGUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 136726 0.66 0.997512
Target:  5'- cGCACGCuucagggGGGGugGGGggccUUGUgCAGCuGGc -3'
miRNA:   3'- -CGUGCG-------CCCUugCUUa---AACA-GUCG-CC- -5'
9735 3' -50.4 NC_002577.1 + 159957 0.66 0.997106
Target:  5'- gGCGC-CGGGAGCGAAcuc-UC-GCGGc -3'
miRNA:   3'- -CGUGcGCCCUUGCUUaaacAGuCGCC- -5'
9735 3' -50.4 NC_002577.1 + 121960 0.66 0.997106
Target:  5'- gGC-CGcCGGGGAgGAggUUGUgggGGCGGg -3'
miRNA:   3'- -CGuGC-GCCCUUgCUuaAACAg--UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 11653 0.66 0.997106
Target:  5'- gGC-CGcCGGGGAgGAggUUGUgggGGCGGg -3'
miRNA:   3'- -CGuGC-GCCCUUgCUuaAACAg--UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 141126 0.66 0.996592
Target:  5'- cCGCGCGGGcAGgGGAUUUagaccgUGGCGGg -3'
miRNA:   3'- cGUGCGCCC-UUgCUUAAAca----GUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 156212 0.66 0.996592
Target:  5'- cCGCGCGGGcAGgGGAUUUagaccgUGGCGGg -3'
miRNA:   3'- cGUGCGCCC-UUgCUUAAAca----GUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 56323 0.67 0.996005
Target:  5'- aGCGggUGCGGGGACGcugGAcUUGcaUCAGCGa -3'
miRNA:   3'- -CGU--GCGCCCUUGC---UUaAAC--AGUCGCc -5'
9735 3' -50.4 NC_002577.1 + 19091 0.68 0.991707
Target:  5'- -aACGgGGucGAGCGAGguuaUGUCAGCGa -3'
miRNA:   3'- cgUGCgCC--CUUGCUUaa--ACAGUCGCc -5'
9735 3' -50.4 NC_002577.1 + 42432 0.68 0.990887
Target:  5'- aGCGCGCGGGuGACGAcggccgcaaaucgucGUUUGUaggucgaUAGCa- -3'
miRNA:   3'- -CGUGCGCCC-UUGCU---------------UAAACA-------GUCGcc -5'
9735 3' -50.4 NC_002577.1 + 134074 0.68 0.989197
Target:  5'- cCGCGCGGccgGCGGGcaUGUCcGGCGGg -3'
miRNA:   3'- cGUGCGCCcu-UGCUUaaACAG-UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 163254 0.68 0.989197
Target:  5'- cCGCGCGGccgGCGGGcaUGUCcGGCGGg -3'
miRNA:   3'- cGUGCGCCcu-UGCUUaaACAG-UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 23023 0.68 0.989197
Target:  5'- uGCAacUGCGGccguCGAAUUUGUUuuagGGCGGg -3'
miRNA:   3'- -CGU--GCGCCcuu-GCUUAAACAG----UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 14573 0.68 0.986132
Target:  5'- uCAUGgGGGAccggcucCGGAUgauugUGUUAGCGGg -3'
miRNA:   3'- cGUGCgCCCUu------GCUUAa----ACAGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.