miRNA: 3'- -CGuGCGCCCuUGCUUaaa---------CAGUCgCC- -5'
miRNA: 3'- -CGUGCGCCCU---------------UGCUUaaaCAGuc-GCC- -5'
miRNA: 3'- -CGuGCGCCCuUGCUUaaa---------CAGUCgCC- -5'
miRNA: 3'- -CGUG--CGCCCUUgCUUa---AACAGU---------CGCC- -5'
Results 41 - 44 of 44 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9735 | 3' | -50.4 | NC_002577.1 | + | 123094 | 0.66 | 0.998083 |
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Target: 5'- cGC-CGCGGGuGCGGGgccggggggaaaGUCGGgGGg -3' miRNA: 3'- -CGuGCGCCCuUGCUUaaa---------CAGUCgCC- -5' |
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| 9735 | 3' | -50.4 | NC_002577.1 | + | 157059 | 0.66 | 0.998083 |
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Target: 5'- gGCGCGCGGGGgcucgcgacggcgcgACGGAgccGUCcucCGGa -3' miRNA: 3'- -CGUGCGCCCU---------------UGCUUaaaCAGuc-GCC- -5' |
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| 9735 | 3' | -50.4 | NC_002577.1 | + | 10520 | 0.66 | 0.998083 |
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Target: 5'- cGC-CGCGGGuGCGGGgccggggggaaaGUCGGgGGg -3' miRNA: 3'- -CGuGCGCCCuUGCUUaaa---------CAGUCgCC- -5' |
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| 9735 | 3' | -50.4 | NC_002577.1 | + | 153488 | 0.66 | 0.998278 |
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Target: 5'- aGCGCuuGCGGGAG-GAAccagUUGUCGguuuuuuauGCGGg -3' miRNA: 3'- -CGUG--CGCCCUUgCUUa---AACAGU---------CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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