Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9735 | 3' | -50.4 | NC_002577.1 | + | 118036 | 0.69 | 0.984369 |
Target: 5'- cGCGCGCGGGuauuggGACGcag-UGUaAGUGGa -3' miRNA: 3'- -CGUGCGCCC------UUGCuuaaACAgUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 134128 | 0.69 | 0.983618 |
Target: 5'- gGC-CGCGcGGAGCcgccggcgGUCGGCGGu -3' miRNA: 3'- -CGuGCGC-CCUUGcuuaaa--CAGUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 163200 | 0.69 | 0.983618 |
Target: 5'- gGC-CGCGcGGAGCcgccggcgGUCGGCGGu -3' miRNA: 3'- -CGuGCGC-CCUUGcuuaaa--CAGUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 89572 | 0.69 | 0.983233 |
Target: 5'- cGCAUGCGGGAACGuAUaccgacgaucuuggaUUGUUGGUc- -3' miRNA: 3'- -CGUGCGCCCUUGCuUA---------------AACAGUCGcc -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 11395 | 0.69 | 0.982441 |
Target: 5'- uGCAaacgaGCGGG-GCGAAcgcGUCAGCGu -3' miRNA: 3'- -CGUg----CGCCCuUGCUUaaaCAGUCGCc -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 122219 | 0.69 | 0.982441 |
Target: 5'- uGCAaacgaGCGGG-GCGAAcgcGUCAGCGu -3' miRNA: 3'- -CGUg----CGCCCuUGCUUaaaCAGUCGCc -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 134166 | 0.69 | 0.980339 |
Target: 5'- uGCGCGCGGcGGacccuaGCGAGcaUGcgcgCGGCGGa -3' miRNA: 3'- -CGUGCGCC-CU------UGCUUaaACa---GUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 163162 | 0.69 | 0.980339 |
Target: 5'- uGCGCGCGGcGGacccuaGCGAGcaUGcgcgCGGCGGa -3' miRNA: 3'- -CGUGCGCC-CU------UGCUUaaACa---GUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 122569 | 0.69 | 0.979673 |
Target: 5'- cCGCGCGGcGAACGAAcccGUCccguugggaucgcaGGCGGc -3' miRNA: 3'- cGUGCGCC-CUUGCUUaaaCAG--------------UCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 11045 | 0.69 | 0.979673 |
Target: 5'- cCGCGCGGcGAACGAAcccGUCccguugggaucgcaGGCGGc -3' miRNA: 3'- cGUGCGCC-CUUGCUUaaaCAG--------------UCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 139015 | 0.69 | 0.978055 |
Target: 5'- -aGCGCGGGAGgGAGcgcgGU-GGCGGg -3' miRNA: 3'- cgUGCGCCCUUgCUUaaa-CAgUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 158322 | 0.69 | 0.978055 |
Target: 5'- -aGCGCGGGAGgGAGcgcgGU-GGCGGg -3' miRNA: 3'- cgUGCGCCCUUgCUUaaa-CAgUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 136808 | 0.7 | 0.963634 |
Target: 5'- cGgACGCGGGuucucGACGGcgUUGUCcGCGc -3' miRNA: 3'- -CgUGCGCCC-----UUGCUuaAACAGuCGCc -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 160529 | 0.7 | 0.963634 |
Target: 5'- cGgACGCGGGuucucGACGGcgUUGUCcGCGc -3' miRNA: 3'- -CgUGCGCCC-----UUGCUuaAACAGuCGCc -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 56217 | 0.7 | 0.963634 |
Target: 5'- -aGCGCGGGAACGAuUUUGa-AGCu- -3' miRNA: 3'- cgUGCGCCCUUGCUuAAACagUCGcc -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 46325 | 0.71 | 0.956339 |
Target: 5'- uGCGCGaaaGGGGuaucaguaGCGGA---GUCGGCGGa -3' miRNA: 3'- -CGUGCg--CCCU--------UGCUUaaaCAGUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 77292 | 0.71 | 0.948107 |
Target: 5'- aGCAUGUGGGAugGGAUggcUG-CAGagaaGGa -3' miRNA: 3'- -CGUGCGCCCUugCUUAa--ACaGUCg---CC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 123473 | 0.71 | 0.938908 |
Target: 5'- ---aGCGGGggUGGGgcaugGUCGGUGGa -3' miRNA: 3'- cgugCGCCCuuGCUUaaa--CAGUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 10141 | 0.71 | 0.938908 |
Target: 5'- ---aGCGGGggUGGGgcaugGUCGGUGGa -3' miRNA: 3'- cgugCGCCCuuGCUUaaa--CAGUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 159731 | 0.73 | 0.905374 |
Target: 5'- uGCGCGCuGGAguGCGAGgggGUCguGGCGGc -3' miRNA: 3'- -CGUGCGcCCU--UGCUUaaaCAG--UCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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