Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9735 | 3' | -50.4 | NC_002577.1 | + | 159731 | 0.73 | 0.905374 |
Target: 5'- uGCGCGCuGGAguGCGAGgggGUCguGGCGGc -3' miRNA: 3'- -CGUGCGcCCU--UGCUUaaaCAG--UCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 7368 | 0.73 | 0.898922 |
Target: 5'- cGCGCGgGGGAGgGAuaaUUGUUuacGCGGg -3' miRNA: 3'- -CGUGCgCCCUUgCUua-AACAGu--CGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 126246 | 0.73 | 0.898922 |
Target: 5'- cGCGCGgGGGAGgGAuaaUUGUUuacGCGGg -3' miRNA: 3'- -CGUGCgCCCUUgCUua-AACAGu--CGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 92546 | 1.13 | 0.007201 |
Target: 5'- aGCACGCGGGAACGAAUUUGUCAGCGGc -3' miRNA: 3'- -CGUGCGCCCUUGCUUAAACAGUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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