miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9735 3' -50.4 NC_002577.1 + 6574 0.66 0.997554
Target:  5'- -uGCGCGGGGAgUGGGg----CGGCGGu -3'
miRNA:   3'- cgUGCGCCCUU-GCUUaaacaGUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 7368 0.73 0.898922
Target:  5'- cGCGCGgGGGAGgGAuaaUUGUUuacGCGGg -3'
miRNA:   3'- -CGUGCgCCCUUgCUua-AACAGu--CGCC- -5'
9735 3' -50.4 NC_002577.1 + 10141 0.71 0.938908
Target:  5'- ---aGCGGGggUGGGgcaugGUCGGUGGa -3'
miRNA:   3'- cgugCGCCCuuGCUUaaa--CAGUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 10520 0.66 0.998083
Target:  5'- cGC-CGCGGGuGCGGGgccggggggaaaGUCGGgGGg -3'
miRNA:   3'- -CGuGCGCCCuUGCUUaaa---------CAGUCgCC- -5'
9735 3' -50.4 NC_002577.1 + 11045 0.69 0.979673
Target:  5'- cCGCGCGGcGAACGAAcccGUCccguugggaucgcaGGCGGc -3'
miRNA:   3'- cGUGCGCC-CUUGCUUaaaCAG--------------UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 11395 0.69 0.982441
Target:  5'- uGCAaacgaGCGGG-GCGAAcgcGUCAGCGu -3'
miRNA:   3'- -CGUg----CGCCCuUGCUUaaaCAGUCGCc -5'
9735 3' -50.4 NC_002577.1 + 11653 0.66 0.997106
Target:  5'- gGC-CGcCGGGGAgGAggUUGUgggGGCGGg -3'
miRNA:   3'- -CGuGC-GCCCUUgCUuaAACAg--UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 14573 0.68 0.986132
Target:  5'- uCAUGgGGGAccggcucCGGAUgauugUGUUAGCGGg -3'
miRNA:   3'- cGUGCgCCCUu------GCUUAa----ACAGUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 19091 0.68 0.991707
Target:  5'- -aACGgGGucGAGCGAGguuaUGUCAGCGa -3'
miRNA:   3'- cgUGCgCC--CUUGCUUaa--ACAGUCGCc -5'
9735 3' -50.4 NC_002577.1 + 23023 0.68 0.989197
Target:  5'- uGCAacUGCGGccguCGAAUUUGUUuuagGGCGGg -3'
miRNA:   3'- -CGU--GCGCCcuu-GCUUAAACAG----UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 42432 0.68 0.990887
Target:  5'- aGCGCGCGGGuGACGAcggccgcaaaucgucGUUUGUaggucgaUAGCa- -3'
miRNA:   3'- -CGUGCGCCC-UUGCU---------------UAAACA-------GUCGcc -5'
9735 3' -50.4 NC_002577.1 + 46325 0.71 0.956339
Target:  5'- uGCGCGaaaGGGGuaucaguaGCGGA---GUCGGCGGa -3'
miRNA:   3'- -CGUGCg--CCCU--------UGCUUaaaCAGUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 56217 0.7 0.963634
Target:  5'- -aGCGCGGGAACGAuUUUGa-AGCu- -3'
miRNA:   3'- cgUGCGCCCUUGCUuAAACagUCGcc -5'
9735 3' -50.4 NC_002577.1 + 56323 0.67 0.996005
Target:  5'- aGCGggUGCGGGGACGcugGAcUUGcaUCAGCGa -3'
miRNA:   3'- -CGU--GCGCCCUUGC---UUaAAC--AGUCGCc -5'
9735 3' -50.4 NC_002577.1 + 77292 0.71 0.948107
Target:  5'- aGCAUGUGGGAugGGAUggcUG-CAGagaaGGa -3'
miRNA:   3'- -CGUGCGCCCUugCUUAa--ACaGUCg---CC- -5'
9735 3' -50.4 NC_002577.1 + 89572 0.69 0.983233
Target:  5'- cGCAUGCGGGAACGuAUaccgacgaucuuggaUUGUUGGUc- -3'
miRNA:   3'- -CGUGCGCCCUUGCuUA---------------AACAGUCGcc -5'
9735 3' -50.4 NC_002577.1 + 92546 1.13 0.007201
Target:  5'- aGCACGCGGGAACGAAUUUGUCAGCGGc -3'
miRNA:   3'- -CGUGCGCCCUUGCUUAAACAGUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 118036 0.69 0.984369
Target:  5'- cGCGCGCGGGuauuggGACGcag-UGUaAGUGGa -3'
miRNA:   3'- -CGUGCGCCC------UUGCuuaaACAgUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 121960 0.66 0.997106
Target:  5'- gGC-CGcCGGGGAgGAggUUGUgggGGCGGg -3'
miRNA:   3'- -CGuGC-GCCCUUgCUuaAACAg--UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 122219 0.69 0.982441
Target:  5'- uGCAaacgaGCGGG-GCGAAcgcGUCAGCGu -3'
miRNA:   3'- -CGUg----CGCCCuUGCUUaaaCAGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.