Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9735 | 3' | -50.4 | NC_002577.1 | + | 122569 | 0.69 | 0.979673 |
Target: 5'- cCGCGCGGcGAACGAAcccGUCccguugggaucgcaGGCGGc -3' miRNA: 3'- cGUGCGCC-CUUGCUUaaaCAG--------------UCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 123094 | 0.66 | 0.998083 |
Target: 5'- cGC-CGCGGGuGCGGGgccggggggaaaGUCGGgGGg -3' miRNA: 3'- -CGuGCGCCCuUGCUUaaa---------CAGUCgCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 123473 | 0.71 | 0.938908 |
Target: 5'- ---aGCGGGggUGGGgcaugGUCGGUGGa -3' miRNA: 3'- cgugCGCCCuuGCUUaaa--CAGUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 126246 | 0.73 | 0.898922 |
Target: 5'- cGCGCGgGGGAGgGAuaaUUGUUuacGCGGg -3' miRNA: 3'- -CGUGCgCCCUUgCUua-AACAGu--CGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 127040 | 0.66 | 0.997554 |
Target: 5'- -uGCGCGGGGAgUGGGg----CGGCGGu -3' miRNA: 3'- cgUGCGCCCUU-GCUUaaacaGUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 134074 | 0.68 | 0.989197 |
Target: 5'- cCGCGCGGccgGCGGGcaUGUCcGGCGGg -3' miRNA: 3'- cGUGCGCCcu-UGCUUaaACAG-UCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 134128 | 0.69 | 0.983618 |
Target: 5'- gGC-CGCGcGGAGCcgccggcgGUCGGCGGu -3' miRNA: 3'- -CGuGCGC-CCUUGcuuaaa--CAGUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 134166 | 0.69 | 0.980339 |
Target: 5'- uGCGCGCGGcGGacccuaGCGAGcaUGcgcgCGGCGGa -3' miRNA: 3'- -CGUGCGCC-CU------UGCUUaaACa---GUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 136726 | 0.66 | 0.997512 |
Target: 5'- cGCACGCuucagggGGGGugGGGggccUUGUgCAGCuGGc -3' miRNA: 3'- -CGUGCG-------CCCUugCUUa---AACA-GUCG-CC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 136808 | 0.7 | 0.963634 |
Target: 5'- cGgACGCGGGuucucGACGGcgUUGUCcGCGc -3' miRNA: 3'- -CgUGCGCCC-----UUGCUuaAACAGuCGCc -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 137606 | 0.73 | 0.905374 |
Target: 5'- uGCGCGCuGGAguGCGAGgggGUCguGGCGGc -3' miRNA: 3'- -CGUGCGcCCU--UGCUUaaaCAG--UCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 139015 | 0.69 | 0.978055 |
Target: 5'- -aGCGCGGGAGgGAGcgcgGU-GGCGGg -3' miRNA: 3'- cgUGCGCCCUUgCUUaaa-CAgUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 140279 | 0.66 | 0.998083 |
Target: 5'- gGCGCGCGGGGgcucgcgacggcgcgACGGAgccGUCcucCGGa -3' miRNA: 3'- -CGUGCGCCCU---------------UGCUUaaaCAGuc-GCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 141126 | 0.66 | 0.996592 |
Target: 5'- cCGCGCGGGcAGgGGAUUUagaccgUGGCGGg -3' miRNA: 3'- cGUGCGCCC-UUgCUUAAAca----GUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 153488 | 0.66 | 0.998278 |
Target: 5'- aGCGCuuGCGGGAG-GAAccagUUGUCGguuuuuuauGCGGg -3' miRNA: 3'- -CGUG--CGCCCUUgCUUa---AACAGU---------CGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 156212 | 0.66 | 0.996592 |
Target: 5'- cCGCGCGGGcAGgGGAUUUagaccgUGGCGGg -3' miRNA: 3'- cGUGCGCCC-UUgCUUAAAca----GUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 157059 | 0.66 | 0.998083 |
Target: 5'- gGCGCGCGGGGgcucgcgacggcgcgACGGAgccGUCcucCGGa -3' miRNA: 3'- -CGUGCGCCCU---------------UGCUUaaaCAGuc-GCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 158322 | 0.69 | 0.978055 |
Target: 5'- -aGCGCGGGAGgGAGcgcgGU-GGCGGg -3' miRNA: 3'- cgUGCGCCCUUgCUUaaa-CAgUCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 159731 | 0.73 | 0.905374 |
Target: 5'- uGCGCGCuGGAguGCGAGgggGUCguGGCGGc -3' miRNA: 3'- -CGUGCGcCCU--UGCUUaaaCAG--UCGCC- -5' |
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9735 | 3' | -50.4 | NC_002577.1 | + | 159957 | 0.66 | 0.997106 |
Target: 5'- gGCGC-CGGGAGCGAAcuc-UC-GCGGc -3' miRNA: 3'- -CGUGcGCCCUUGCUUaaacAGuCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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