miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9735 3' -50.4 NC_002577.1 + 163254 0.68 0.989197
Target:  5'- cCGCGCGGccgGCGGGcaUGUCcGGCGGg -3'
miRNA:   3'- cGUGCGCCcu-UGCUUaaACAG-UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 163200 0.69 0.983618
Target:  5'- gGC-CGCGcGGAGCcgccggcgGUCGGCGGu -3'
miRNA:   3'- -CGuGCGC-CCUUGcuuaaa--CAGUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 163162 0.69 0.980339
Target:  5'- uGCGCGCGGcGGacccuaGCGAGcaUGcgcgCGGCGGa -3'
miRNA:   3'- -CGUGCGCC-CU------UGCUUaaACa---GUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 160529 0.7 0.963634
Target:  5'- cGgACGCGGGuucucGACGGcgUUGUCcGCGc -3'
miRNA:   3'- -CgUGCGCCC-----UUGCUuaAACAGuCGCc -5'
9735 3' -50.4 NC_002577.1 + 159957 0.66 0.997106
Target:  5'- gGCGC-CGGGAGCGAAcuc-UC-GCGGc -3'
miRNA:   3'- -CGUGcGCCCUUGCUUaaacAGuCGCC- -5'
9735 3' -50.4 NC_002577.1 + 159731 0.73 0.905374
Target:  5'- uGCGCGCuGGAguGCGAGgggGUCguGGCGGc -3'
miRNA:   3'- -CGUGCGcCCU--UGCUUaaaCAG--UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 158322 0.69 0.978055
Target:  5'- -aGCGCGGGAGgGAGcgcgGU-GGCGGg -3'
miRNA:   3'- cgUGCGCCCUUgCUUaaa-CAgUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 157059 0.66 0.998083
Target:  5'- gGCGCGCGGGGgcucgcgacggcgcgACGGAgccGUCcucCGGa -3'
miRNA:   3'- -CGUGCGCCCU---------------UGCUUaaaCAGuc-GCC- -5'
9735 3' -50.4 NC_002577.1 + 156212 0.66 0.996592
Target:  5'- cCGCGCGGGcAGgGGAUUUagaccgUGGCGGg -3'
miRNA:   3'- cGUGCGCCC-UUgCUUAAAca----GUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 153488 0.66 0.998278
Target:  5'- aGCGCuuGCGGGAG-GAAccagUUGUCGguuuuuuauGCGGg -3'
miRNA:   3'- -CGUG--CGCCCUUgCUUa---AACAGU---------CGCC- -5'
9735 3' -50.4 NC_002577.1 + 141126 0.66 0.996592
Target:  5'- cCGCGCGGGcAGgGGAUUUagaccgUGGCGGg -3'
miRNA:   3'- cGUGCGCCC-UUgCUUAAAca----GUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 140279 0.66 0.998083
Target:  5'- gGCGCGCGGGGgcucgcgacggcgcgACGGAgccGUCcucCGGa -3'
miRNA:   3'- -CGUGCGCCCU---------------UGCUUaaaCAGuc-GCC- -5'
9735 3' -50.4 NC_002577.1 + 139015 0.69 0.978055
Target:  5'- -aGCGCGGGAGgGAGcgcgGU-GGCGGg -3'
miRNA:   3'- cgUGCGCCCUUgCUUaaa-CAgUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 137606 0.73 0.905374
Target:  5'- uGCGCGCuGGAguGCGAGgggGUCguGGCGGc -3'
miRNA:   3'- -CGUGCGcCCU--UGCUUaaaCAG--UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 136808 0.7 0.963634
Target:  5'- cGgACGCGGGuucucGACGGcgUUGUCcGCGc -3'
miRNA:   3'- -CgUGCGCCC-----UUGCUuaAACAGuCGCc -5'
9735 3' -50.4 NC_002577.1 + 136726 0.66 0.997512
Target:  5'- cGCACGCuucagggGGGGugGGGggccUUGUgCAGCuGGc -3'
miRNA:   3'- -CGUGCG-------CCCUugCUUa---AACA-GUCG-CC- -5'
9735 3' -50.4 NC_002577.1 + 134166 0.69 0.980339
Target:  5'- uGCGCGCGGcGGacccuaGCGAGcaUGcgcgCGGCGGa -3'
miRNA:   3'- -CGUGCGCC-CU------UGCUUaaACa---GUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 134128 0.69 0.983618
Target:  5'- gGC-CGCGcGGAGCcgccggcgGUCGGCGGu -3'
miRNA:   3'- -CGuGCGC-CCUUGcuuaaa--CAGUCGCC- -5'
9735 3' -50.4 NC_002577.1 + 134074 0.68 0.989197
Target:  5'- cCGCGCGGccgGCGGGcaUGUCcGGCGGg -3'
miRNA:   3'- cGUGCGCCcu-UGCUUaaACAG-UCGCC- -5'
9735 3' -50.4 NC_002577.1 + 127040 0.66 0.997554
Target:  5'- -uGCGCGGGGAgUGGGg----CGGCGGu -3'
miRNA:   3'- cgUGCGCCCUU-GCUUaaacaGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.