Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9735 | 5' | -51.3 | NC_002577.1 | + | 42051 | 0.66 | 0.993568 |
Target: 5'- cCGCCUUUGCA---AGACgCGUGgcgcagauaUCCCa -3' miRNA: 3'- -GUGGAGACGUguuUUUGgGCAC---------AGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 111398 | 0.66 | 0.991489 |
Target: 5'- cCACUUCUGuCACGucGGCugcauuCUGUGUUCCa -3' miRNA: 3'- -GUGGAGAC-GUGUuuUUG------GGCACAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 140051 | 0.66 | 0.991256 |
Target: 5'- gGCCguucgaauggcgUUGCGCGAAAggucGCCCGcUGcCCCa -3' miRNA: 3'- gUGGa-----------GACGUGUUUU----UGGGC-ACaGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 157287 | 0.66 | 0.991255 |
Target: 5'- gGCCguucgaauggcgUUGCGCGAAAggucGCCCGcUGcCCCa -3' miRNA: 3'- gUGGa-----------GACGUGUUUU----UGGGC-ACaGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 154437 | 0.66 | 0.991137 |
Target: 5'- aCGCgCUCUcGCACAGGAggaaguguuaaGCCCucucgucgcagacuGUGUCCUc -3' miRNA: 3'- -GUG-GAGA-CGUGUUUU-----------UGGG--------------CACAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 759 | 0.66 | 0.990268 |
Target: 5'- gGCCgg-GUACAAGuuGCCCGgGUCCg -3' miRNA: 3'- gUGGagaCGUGUUUu-UGGGCaCAGGg -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 132854 | 0.66 | 0.990268 |
Target: 5'- gGCCgg-GUACAAGuuGCCCGgGUCCg -3' miRNA: 3'- gUGGagaCGUGUUUu-UGGGCaCAGGg -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 5053 | 0.67 | 0.988914 |
Target: 5'- gGCCgagcaUCgGCGCGc--GCgCCGUGUCCCc -3' miRNA: 3'- gUGG-----AGaCGUGUuuuUG-GGCACAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 128561 | 0.67 | 0.988913 |
Target: 5'- gGCCgagcaUCgGCGCGc--GCgCCGUGUCCCc -3' miRNA: 3'- gUGG-----AGaCGUGUuuuUG-GGCACAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 37273 | 0.67 | 0.988913 |
Target: 5'- gACCUCUGCaaacACAAGccuGCCCGaGcgauccgcacUCCCa -3' miRNA: 3'- gUGGAGACG----UGUUUu--UGGGCaC----------AGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 151006 | 0.67 | 0.987417 |
Target: 5'- aCACCg--GUACAuauuacauCCgCGUGUCCCu -3' miRNA: 3'- -GUGGagaCGUGUuuuu----GG-GCACAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 85714 | 0.67 | 0.98377 |
Target: 5'- uCGCUggacCUGCACGucAGAGCCuugacauCGUGUUCCa -3' miRNA: 3'- -GUGGa---GACGUGU--UUUUGG-------GCACAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 142844 | 0.67 | 0.981982 |
Target: 5'- gACCUCUGCuCGAGAgauaaggaaaGCCCc--UCCCa -3' miRNA: 3'- gUGGAGACGuGUUUU----------UGGGcacAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 72683 | 0.67 | 0.981982 |
Target: 5'- uCGCCccaUCUgGUGCAGAu-CCCGUG-CCCg -3' miRNA: 3'- -GUGG---AGA-CGUGUUUuuGGGCACaGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 109912 | 0.68 | 0.977485 |
Target: 5'- aUugCUC-GCuCGAAGcguugGCCgCGUGUCCCg -3' miRNA: 3'- -GugGAGaCGuGUUUU-----UGG-GCACAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 156669 | 0.68 | 0.977485 |
Target: 5'- aCGCCUCUGC-CGucuACCCcccUCCCu -3' miRNA: 3'- -GUGGAGACGuGUuuuUGGGcacAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 25184 | 0.68 | 0.974949 |
Target: 5'- -cCCUCUGCuaaaAUAcAGGCUCGUGUUCUa -3' miRNA: 3'- guGGAGACG----UGUuUUUGGGCACAGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 77698 | 0.68 | 0.974149 |
Target: 5'- aCGCUUCUGgACAuucugcggcgaucacGAUCCGUGcCCCg -3' miRNA: 3'- -GUGGAGACgUGUuu-------------UUGGGCACaGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 89495 | 0.68 | 0.972211 |
Target: 5'- aCACCUCgGaCGCGAGAGCauCCGUGuauaUCUCa -3' miRNA: 3'- -GUGGAGaC-GUGUUUUUG--GGCAC----AGGG- -5' |
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9735 | 5' | -51.3 | NC_002577.1 | + | 158336 | 0.68 | 0.970468 |
Target: 5'- gACCUCUGUACAAAGccauacuugauuggcGCgCCGccGUCaCCg -3' miRNA: 3'- gUGGAGACGUGUUUU---------------UG-GGCa-CAG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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