miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9735 5' -51.3 NC_002577.1 + 37273 0.67 0.988913
Target:  5'- gACCUCUGCaaacACAAGccuGCCCGaGcgauccgcacUCCCa -3'
miRNA:   3'- gUGGAGACG----UGUUUu--UGGGCaC----------AGGG- -5'
9735 5' -51.3 NC_002577.1 + 128561 0.67 0.988913
Target:  5'- gGCCgagcaUCgGCGCGc--GCgCCGUGUCCCc -3'
miRNA:   3'- gUGG-----AGaCGUGUuuuUG-GGCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 5053 0.67 0.988914
Target:  5'- gGCCgagcaUCgGCGCGc--GCgCCGUGUCCCc -3'
miRNA:   3'- gUGG-----AGaCGUGUuuuUG-GGCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 132854 0.66 0.990268
Target:  5'- gGCCgg-GUACAAGuuGCCCGgGUCCg -3'
miRNA:   3'- gUGGagaCGUGUUUu-UGGGCaCAGGg -5'
9735 5' -51.3 NC_002577.1 + 759 0.66 0.990268
Target:  5'- gGCCgg-GUACAAGuuGCCCGgGUCCg -3'
miRNA:   3'- gUGGagaCGUGUUUu-UGGGCaCAGGg -5'
9735 5' -51.3 NC_002577.1 + 154437 0.66 0.991137
Target:  5'- aCGCgCUCUcGCACAGGAggaaguguuaaGCCCucucgucgcagacuGUGUCCUc -3'
miRNA:   3'- -GUG-GAGA-CGUGUUUU-----------UGGG--------------CACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 157287 0.66 0.991255
Target:  5'- gGCCguucgaauggcgUUGCGCGAAAggucGCCCGcUGcCCCa -3'
miRNA:   3'- gUGGa-----------GACGUGUUUU----UGGGC-ACaGGG- -5'
9735 5' -51.3 NC_002577.1 + 140051 0.66 0.991256
Target:  5'- gGCCguucgaauggcgUUGCGCGAAAggucGCCCGcUGcCCCa -3'
miRNA:   3'- gUGGa-----------GACGUGUUUU----UGGGC-ACaGGG- -5'
9735 5' -51.3 NC_002577.1 + 111398 0.66 0.991489
Target:  5'- cCACUUCUGuCACGucGGCugcauuCUGUGUUCCa -3'
miRNA:   3'- -GUGGAGAC-GUGUuuUUG------GGCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 42051 0.66 0.993568
Target:  5'- cCGCCUUUGCA---AGACgCGUGgcgcagauaUCCCa -3'
miRNA:   3'- -GUGGAGACGUguuUUUGgGCAC---------AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.