miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9735 5' -51.3 NC_002577.1 + 759 0.66 0.990268
Target:  5'- gGCCgg-GUACAAGuuGCCCGgGUCCg -3'
miRNA:   3'- gUGGagaCGUGUUUu-UGGGCaCAGGg -5'
9735 5' -51.3 NC_002577.1 + 4372 0.73 0.818447
Target:  5'- uGCCUgUGCgaGCGcAGGACUCGUGUCCa -3'
miRNA:   3'- gUGGAgACG--UGU-UUUUGGGCACAGGg -5'
9735 5' -51.3 NC_002577.1 + 5053 0.67 0.988914
Target:  5'- gGCCgagcaUCgGCGCGc--GCgCCGUGUCCCc -3'
miRNA:   3'- gUGG-----AGaCGUGUuuuUG-GGCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 25184 0.68 0.974949
Target:  5'- -cCCUCUGCuaaaAUAcAGGCUCGUGUUCUa -3'
miRNA:   3'- guGGAGACG----UGUuUUUGGGCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 25545 0.69 0.945486
Target:  5'- gCGCauaaaaaUCUGCGCAuuuuggucauuggcGucACCCGUGUCCa -3'
miRNA:   3'- -GUGg------AGACGUGU--------------UuuUGGGCACAGGg -5'
9735 5' -51.3 NC_002577.1 + 37273 0.67 0.988913
Target:  5'- gACCUCUGCaaacACAAGccuGCCCGaGcgauccgcacUCCCa -3'
miRNA:   3'- gUGGAGACG----UGUUUu--UGGGCaC----------AGGG- -5'
9735 5' -51.3 NC_002577.1 + 42051 0.66 0.993568
Target:  5'- cCGCCUUUGCA---AGACgCGUGgcgcagauaUCCCa -3'
miRNA:   3'- -GUGGAGACGUguuUUUGgGCAC---------AGGG- -5'
9735 5' -51.3 NC_002577.1 + 72683 0.67 0.981982
Target:  5'- uCGCCccaUCUgGUGCAGAu-CCCGUG-CCCg -3'
miRNA:   3'- -GUGG---AGA-CGUGUUUuuGGGCACaGGG- -5'
9735 5' -51.3 NC_002577.1 + 77698 0.68 0.974149
Target:  5'- aCGCUUCUGgACAuucugcggcgaucacGAUCCGUGcCCCg -3'
miRNA:   3'- -GUGGAGACgUGUuu-------------UUGGGCACaGGG- -5'
9735 5' -51.3 NC_002577.1 + 85714 0.67 0.98377
Target:  5'- uCGCUggacCUGCACGucAGAGCCuugacauCGUGUUCCa -3'
miRNA:   3'- -GUGGa---GACGUGU--UUUUGG-------GCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 89495 0.68 0.972211
Target:  5'- aCACCUCgGaCGCGAGAGCauCCGUGuauaUCUCa -3'
miRNA:   3'- -GUGGAGaC-GUGUUUUUG--GGCAC----AGGG- -5'
9735 5' -51.3 NC_002577.1 + 92580 1.13 0.004901
Target:  5'- gCACCUCUGCACAAAAACCCGUGUCCCg -3'
miRNA:   3'- -GUGGAGACGUGUUUUUGGGCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 109912 0.68 0.977485
Target:  5'- aUugCUC-GCuCGAAGcguugGCCgCGUGUCCCg -3'
miRNA:   3'- -GugGAGaCGuGUUUU-----UGG-GCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 111398 0.66 0.991489
Target:  5'- cCACUUCUGuCACGucGGCugcauuCUGUGUUCCa -3'
miRNA:   3'- -GUGGAGAC-GUGUuuUUG------GGCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 113452 0.77 0.597758
Target:  5'- aACCUCacGCACGuAAACCCGUgagcgcGUCCCa -3'
miRNA:   3'- gUGGAGa-CGUGUuUUUGGGCA------CAGGG- -5'
9735 5' -51.3 NC_002577.1 + 128561 0.67 0.988913
Target:  5'- gGCCgagcaUCgGCGCGc--GCgCCGUGUCCCc -3'
miRNA:   3'- gUGG-----AGaCGUGUuuuUG-GGCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 129242 0.73 0.818447
Target:  5'- uGCCUgUGCgaGCGcAGGACUCGUGUCCa -3'
miRNA:   3'- gUGGAgACG--UGU-UUUUGGGCACAGGg -5'
9735 5' -51.3 NC_002577.1 + 132854 0.66 0.990268
Target:  5'- gGCCgg-GUACAAGuuGCCCGgGUCCg -3'
miRNA:   3'- gUGGagaCGUGUUUu-UGGGCaCAGGg -5'
9735 5' -51.3 NC_002577.1 + 136196 0.72 0.882788
Target:  5'- aCGCCUCUGUuugaaACGAGAaaaaagGCUCGUgGUCCUg -3'
miRNA:   3'- -GUGGAGACG-----UGUUUU------UGGGCA-CAGGG- -5'
9735 5' -51.3 NC_002577.1 + 137576 0.78 0.576914
Target:  5'- gCGCUUCUGCGCG--GACCCGacgGUCCg -3'
miRNA:   3'- -GUGGAGACGUGUuuUUGGGCa--CAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.