miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9735 5' -51.3 NC_002577.1 + 139002 0.68 0.970468
Target:  5'- gACCUCUGUACAAAGccauacuugauuggcGCgCCGccGUCaCCg -3'
miRNA:   3'- gUGGAGACGUGUUUU---------------UG-GGCa-CAG-GG- -5'
9735 5' -51.3 NC_002577.1 + 140051 0.66 0.991256
Target:  5'- gGCCguucgaauggcgUUGCGCGAAAggucGCCCGcUGcCCCa -3'
miRNA:   3'- gUGGa-----------GACGUGUUUU----UGGGC-ACaGGG- -5'
9735 5' -51.3 NC_002577.1 + 142844 0.67 0.981982
Target:  5'- gACCUCUGCuCGAGAgauaaggaaaGCCCc--UCCCa -3'
miRNA:   3'- gUGGAGACGuGUUUU----------UGGGcacAGGG- -5'
9735 5' -51.3 NC_002577.1 + 151006 0.67 0.987417
Target:  5'- aCACCg--GUACAuauuacauCCgCGUGUCCCu -3'
miRNA:   3'- -GUGGagaCGUGUuuuu----GG-GCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 154437 0.66 0.991137
Target:  5'- aCGCgCUCUcGCACAGGAggaaguguuaaGCCCucucgucgcagacuGUGUCCUc -3'
miRNA:   3'- -GUG-GAGA-CGUGUUUU-----------UGGG--------------CACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 156669 0.68 0.977485
Target:  5'- aCGCCUCUGC-CGucuACCCcccUCCCu -3'
miRNA:   3'- -GUGGAGACGuGUuuuUGGGcacAGGG- -5'
9735 5' -51.3 NC_002577.1 + 157287 0.66 0.991255
Target:  5'- gGCCguucgaauggcgUUGCGCGAAAggucGCCCGcUGcCCCa -3'
miRNA:   3'- gUGGa-----------GACGUGUUUU----UGGGC-ACaGGG- -5'
9735 5' -51.3 NC_002577.1 + 158336 0.68 0.970468
Target:  5'- gACCUCUGUACAAAGccauacuugauuggcGCgCCGccGUCaCCg -3'
miRNA:   3'- gUGGAGACGUGUUUU---------------UG-GGCa-CAG-GG- -5'
9735 5' -51.3 NC_002577.1 + 159761 0.78 0.576913
Target:  5'- gCGCUUCUGCGCG--GACCCGacgGUCCg -3'
miRNA:   3'- -GUGGAGACGUGUuuUUGGGCa--CAGGg -5'
9735 5' -51.3 NC_002577.1 + 161142 0.72 0.882788
Target:  5'- aCGCCUCUGUuugaaACGAGAaaaaagGCUCGUgGUCCUg -3'
miRNA:   3'- -GUGGAGACG-----UGUUUU------UGGGCA-CAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.