miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9735 5' -51.3 NC_002577.1 + 5053 0.67 0.988914
Target:  5'- gGCCgagcaUCgGCGCGc--GCgCCGUGUCCCc -3'
miRNA:   3'- gUGG-----AGaCGUGUuuuUG-GGCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 85714 0.67 0.98377
Target:  5'- uCGCUggacCUGCACGucAGAGCCuugacauCGUGUUCCa -3'
miRNA:   3'- -GUGGa---GACGUGU--UUUUGG-------GCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 142844 0.67 0.981982
Target:  5'- gACCUCUGCuCGAGAgauaaggaaaGCCCc--UCCCa -3'
miRNA:   3'- gUGGAGACGuGUUUU----------UGGGcacAGGG- -5'
9735 5' -51.3 NC_002577.1 + 109912 0.68 0.977485
Target:  5'- aUugCUC-GCuCGAAGcguugGCCgCGUGUCCCg -3'
miRNA:   3'- -GugGAGaCGuGUUUU-----UGG-GCACAGGG- -5'
9735 5' -51.3 NC_002577.1 + 139002 0.68 0.970468
Target:  5'- gACCUCUGUACAAAGccauacuugauuggcGCgCCGccGUCaCCg -3'
miRNA:   3'- gUGGAGACGUGUUUU---------------UG-GGCa-CAG-GG- -5'
9735 5' -51.3 NC_002577.1 + 25545 0.69 0.945486
Target:  5'- gCGCauaaaaaUCUGCGCAuuuuggucauuggcGucACCCGUGUCCa -3'
miRNA:   3'- -GUGg------AGACGUGU--------------UuuUGGGCACAGGg -5'
9735 5' -51.3 NC_002577.1 + 136196 0.72 0.882788
Target:  5'- aCGCCUCUGUuugaaACGAGAaaaaagGCUCGUgGUCCUg -3'
miRNA:   3'- -GUGGAGACG-----UGUUUU------UGGGCA-CAGGG- -5'
9735 5' -51.3 NC_002577.1 + 4372 0.73 0.818447
Target:  5'- uGCCUgUGCgaGCGcAGGACUCGUGUCCa -3'
miRNA:   3'- gUGGAgACG--UGU-UUUUGGGCACAGGg -5'
9735 5' -51.3 NC_002577.1 + 113452 0.77 0.597758
Target:  5'- aACCUCacGCACGuAAACCCGUgagcgcGUCCCa -3'
miRNA:   3'- gUGGAGa-CGUGUuUUUGGGCA------CAGGG- -5'
9735 5' -51.3 NC_002577.1 + 42051 0.66 0.993568
Target:  5'- cCGCCUUUGCA---AGACgCGUGgcgcagauaUCCCa -3'
miRNA:   3'- -GUGGAGACGUguuUUUGgGCAC---------AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.