miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9737 3' -48.1 NC_002577.1 + 102496 0.66 0.999358
Target:  5'- cUCUUCCGAggcaucccCUaACGCGA-GGUAGAcgACg -3'
miRNA:   3'- cAGAAGGCU--------GA-UGCGCUaUCAUCU--UG- -5'
9737 3' -48.1 NC_002577.1 + 76827 0.66 0.999358
Target:  5'- cUCgaucCCGACUGCuGCG-UGGUAGAuuGCu -3'
miRNA:   3'- cAGaa--GGCUGAUG-CGCuAUCAUCU--UG- -5'
9737 3' -48.1 NC_002577.1 + 160073 0.67 0.999206
Target:  5'- -aCUUCCGugcucCUGCGCGAaugugGGUcgaGGGGCg -3'
miRNA:   3'- caGAAGGCu----GAUGCGCUa----UCA---UCUUG- -5'
9737 3' -48.1 NC_002577.1 + 49257 0.67 0.999206
Target:  5'- uGUUUUCCGACccgACGCcaauaaAUGGUGcGAGCg -3'
miRNA:   3'- -CAGAAGGCUGa--UGCGc-----UAUCAU-CUUG- -5'
9737 3' -48.1 NC_002577.1 + 137265 0.67 0.999206
Target:  5'- -aCUUCCGugcucCUGCGCGAaugugGGUcgaGGGGCg -3'
miRNA:   3'- caGAAGGCu----GAUGCGCUa----UCA---UCUUG- -5'
9737 3' -48.1 NC_002577.1 + 77644 0.67 0.999024
Target:  5'- cUCcUCCGugUuuaGUGAUAGUGGAcACg -3'
miRNA:   3'- cAGaAGGCugAug-CGCUAUCAUCU-UG- -5'
9737 3' -48.1 NC_002577.1 + 10304 0.67 0.998252
Target:  5'- uGUCUggCCGGCUcgGCGCGAgccggccucggAG-AGAACg -3'
miRNA:   3'- -CAGAa-GGCUGA--UGCGCUa----------UCaUCUUG- -5'
9737 3' -48.1 NC_002577.1 + 123310 0.67 0.998252
Target:  5'- uGUCUggCCGGCUcgGCGCGAgccggccucggAG-AGAACg -3'
miRNA:   3'- -CAGAa-GGCUGA--UGCGCUa----------UCaUCUUG- -5'
9737 3' -48.1 NC_002577.1 + 112837 0.67 0.998252
Target:  5'- -gCUUCCGuuUUGCGUGAUAccGGAGCg -3'
miRNA:   3'- caGAAGGCu-GAUGCGCUAUcaUCUUG- -5'
9737 3' -48.1 NC_002577.1 + 110622 0.71 0.972602
Target:  5'- uUCUUCCGcagucgcgaucguCUGCGCGGUGGcaaAGGACa -3'
miRNA:   3'- cAGAAGGCu------------GAUGCGCUAUCa--UCUUG- -5'
9737 3' -48.1 NC_002577.1 + 100725 1.12 0.011975
Target:  5'- cGUCUUCCGACUACGCGAUAGUAGAACa -3'
miRNA:   3'- -CAGAAGGCUGAUGCGCUAUCAUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.