miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9737 5' -62.9 NC_002577.1 + 11794 0.66 0.636375
Target:  5'- gGCGCCUUuucccCcGCCGCAucgcguuccgccGGGCCGGUcGGa -3'
miRNA:   3'- -UGCGGGGu----GaCGGCGU------------CCUGGCCA-CC- -5'
9737 5' -62.9 NC_002577.1 + 121819 0.66 0.636375
Target:  5'- gGCGCCUUuucccCcGCCGCAucgcguuccgccGGGCCGGUcGGa -3'
miRNA:   3'- -UGCGGGGu----GaCGGCGU------------CCUGGCCA-CC- -5'
9737 5' -62.9 NC_002577.1 + 27097 0.66 0.636375
Target:  5'- aACGUCCUc--GCCGCGcGGACUGGUuucGGg -3'
miRNA:   3'- -UGCGGGGugaCGGCGU-CCUGGCCA---CC- -5'
9737 5' -62.9 NC_002577.1 + 136904 0.67 0.597688
Target:  5'- -gGCCCgCACggGCUcgggagaacuuGCGGGGCCGG-GGu -3'
miRNA:   3'- ugCGGG-GUGa-CGG-----------CGUCCUGGCCaCC- -5'
9737 5' -62.9 NC_002577.1 + 160433 0.67 0.597688
Target:  5'- -gGCCCgCACggGCUcgggagaacuuGCGGGGCCGG-GGu -3'
miRNA:   3'- ugCGGG-GUGa-CGG-----------CGUCCUGGCCaCC- -5'
9737 5' -62.9 NC_002577.1 + 10513 0.67 0.578455
Target:  5'- cCGaCCUCGCcGCgggUGCGGGGCCGGgGGg -3'
miRNA:   3'- uGC-GGGGUGaCG---GCGUCCUGGCCaCC- -5'
9737 5' -62.9 NC_002577.1 + 123101 0.67 0.578455
Target:  5'- cCGaCCUCGCcGCgggUGCGGGGCCGGgGGg -3'
miRNA:   3'- uGC-GGGGUGaCG---GCGUCCUGGCCaCC- -5'
9737 5' -62.9 NC_002577.1 + 129233 0.67 0.568888
Target:  5'- cCGCCCaGCUGCCugugcgagcGCAGGACUcGUGu -3'
miRNA:   3'- uGCGGGgUGACGG---------CGUCCUGGcCACc -5'
9737 5' -62.9 NC_002577.1 + 4381 0.67 0.568888
Target:  5'- cCGCCCaGCUGCCugugcgagcGCAGGACUcGUGu -3'
miRNA:   3'- uGCGGGgUGACGG---------CGUCCUGGcCACc -5'
9737 5' -62.9 NC_002577.1 + 85682 0.67 0.55936
Target:  5'- gUGUUCCAC-GCCGCccGGGACCGGcGa -3'
miRNA:   3'- uGCGGGGUGaCGGCG--UCCUGGCCaCc -5'
9737 5' -62.9 NC_002577.1 + 138416 0.68 0.497835
Target:  5'- uGCGCCgCCACcGCCGgAugaccucgaccaagaGGugUGGUGGc -3'
miRNA:   3'- -UGCGG-GGUGaCGGCgU---------------CCugGCCACC- -5'
9737 5' -62.9 NC_002577.1 + 158921 0.68 0.497835
Target:  5'- uGCGCCgCCACcGCCGgAugaccucgaccaagaGGugUGGUGGc -3'
miRNA:   3'- -UGCGG-GGUGaCGGCgU---------------CCugGCCACC- -5'
9737 5' -62.9 NC_002577.1 + 161004 0.68 0.493292
Target:  5'- cCGCCUCugccuaccggagaGC-GCCGCcugggcGGGCCGGUGGa -3'
miRNA:   3'- uGCGGGG-------------UGaCGGCGu-----CCUGGCCACC- -5'
9737 5' -62.9 NC_002577.1 + 100003 0.68 0.485162
Target:  5'- uAUGCCCUaccgACUGUaaGCAGGGCCGGa-- -3'
miRNA:   3'- -UGCGGGG----UGACGg-CGUCCUGGCCacc -5'
9737 5' -62.9 NC_002577.1 + 8721 0.69 0.458542
Target:  5'- uGCGUCUC----CCGCGGGGCCGGUGa -3'
miRNA:   3'- -UGCGGGGugacGGCGUCCUGGCCACc -5'
9737 5' -62.9 NC_002577.1 + 124893 0.69 0.458542
Target:  5'- uGCGUCUC----CCGCGGGGCCGGUGa -3'
miRNA:   3'- -UGCGGGGugacGGCGUCCUGGCCACc -5'
9737 5' -62.9 NC_002577.1 + 140034 0.7 0.383736
Target:  5'- uGCGCgaaaggucgCCCGCUGCCcCAGGAgCCGGUc- -3'
miRNA:   3'- -UGCG---------GGGUGACGGcGUCCU-GGCCAcc -5'
9737 5' -62.9 NC_002577.1 + 157304 0.7 0.383736
Target:  5'- uGCGCgaaaggucgCCCGCUGCCcCAGGAgCCGGUc- -3'
miRNA:   3'- -UGCG---------GGGUGACGGcGUCCU-GGCCAcc -5'
9737 5' -62.9 NC_002577.1 + 66360 0.71 0.375936
Target:  5'- uAUGgCCCGC-GUgGCAGGACUGGUcGGg -3'
miRNA:   3'- -UGCgGGGUGaCGgCGUCCUGGCCA-CC- -5'
9737 5' -62.9 NC_002577.1 + 134069 0.71 0.360661
Target:  5'- aGCGCCCgCGCgGCCgGCGGGcauguCCGGcGGg -3'
miRNA:   3'- -UGCGGG-GUGaCGG-CGUCCu----GGCCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.