miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9738 5' -50.8 NC_002577.1 + 51682 0.66 0.995892
Target:  5'- gGCAUaAUCUGUCGGGAcuaGUguGUCCa -3'
miRNA:   3'- -UGUA-UAGACGGCCUUag-CGguUAGGg -5'
9738 5' -50.8 NC_002577.1 + 11013 0.66 0.992548
Target:  5'- cGCAgg-CgGCCGGGAagcgaUCGCgCGccGUCCCg -3'
miRNA:   3'- -UGUauaGaCGGCCUU-----AGCG-GU--UAGGG- -5'
9738 5' -50.8 NC_002577.1 + 122601 0.66 0.992548
Target:  5'- cGCAgg-CgGCCGGGAagcgaUCGCgCGccGUCCCg -3'
miRNA:   3'- -UGUauaGaCGGCCUU-----AGCG-GU--UAGGG- -5'
9738 5' -50.8 NC_002577.1 + 157126 0.67 0.991441
Target:  5'- cGCGU---UGUCGGAcgcUCGCCGGUgCCCu -3'
miRNA:   3'- -UGUAuagACGGCCUu--AGCGGUUA-GGG- -5'
9738 5' -50.8 NC_002577.1 + 112544 0.67 0.991441
Target:  5'- uGCAUcaaGUUUGCCGucGGA-CGCCGAUCUg -3'
miRNA:   3'- -UGUA---UAGACGGC--CUUaGCGGUUAGGg -5'
9738 5' -50.8 NC_002577.1 + 1040 0.67 0.991441
Target:  5'- cGCGgggggCUGgCGGAGacCGCCucuGUCCCg -3'
miRNA:   3'- -UGUaua--GACgGCCUUa-GCGGu--UAGGG- -5'
9738 5' -50.8 NC_002577.1 + 132573 0.67 0.991441
Target:  5'- cGCGgggggCUGgCGGAGacCGCCucuGUCCCg -3'
miRNA:   3'- -UGUaua--GACgGCCUUa-GCGGu--UAGGG- -5'
9738 5' -50.8 NC_002577.1 + 140212 0.67 0.991441
Target:  5'- cGCGU---UGUCGGAcgcUCGCCGGUgCCCu -3'
miRNA:   3'- -UGUAuagACGGCCUu--AGCGGUUA-GGG- -5'
9738 5' -50.8 NC_002577.1 + 59689 0.67 0.990207
Target:  5'- gACAUGUUcaGCC-GAAUCGCCAcggCCUg -3'
miRNA:   3'- -UGUAUAGa-CGGcCUUAGCGGUua-GGG- -5'
9738 5' -50.8 NC_002577.1 + 5378 0.67 0.985129
Target:  5'- cCGUAUUgcgGUCGGAccgcacgacggcgcGUCGuCCAGUCCUu -3'
miRNA:   3'- uGUAUAGa--CGGCCU--------------UAGC-GGUUAGGG- -5'
9738 5' -50.8 NC_002577.1 + 128236 0.67 0.985129
Target:  5'- cCGUAUUgcgGUCGGAccgcacgacggcgcGUCGuCCAGUCCUu -3'
miRNA:   3'- uGUAUAGa--CGGCCU--------------UAGC-GGUUAGGG- -5'
9738 5' -50.8 NC_002577.1 + 16939 0.68 0.981831
Target:  5'- -----aCUGCCaGAuUCGCCGAUCUg -3'
miRNA:   3'- uguauaGACGGcCUuAGCGGUUAGGg -5'
9738 5' -50.8 NC_002577.1 + 19400 0.68 0.981831
Target:  5'- gUAUAUCUGCCucgcGGAUCGCU--UCCg -3'
miRNA:   3'- uGUAUAGACGGc---CUUAGCGGuuAGGg -5'
9738 5' -50.8 NC_002577.1 + 155801 0.68 0.981831
Target:  5'- cCAgugCUGCCGGcGUCGCCAcgGUUggaCCg -3'
miRNA:   3'- uGUauaGACGGCCuUAGCGGU--UAG---GG- -5'
9738 5' -50.8 NC_002577.1 + 141536 0.68 0.981831
Target:  5'- cCAgugCUGCCGGcGUCGCCAcgGUUggaCCg -3'
miRNA:   3'- uGUauaGACGGCCuUAGCGGU--UAG---GG- -5'
9738 5' -50.8 NC_002577.1 + 94011 0.69 0.971944
Target:  5'- gGCAUAUCaGCCGGucucucguaauGAUgGCCg--CCCg -3'
miRNA:   3'- -UGUAUAGaCGGCC-----------UUAgCGGuuaGGG- -5'
9738 5' -50.8 NC_002577.1 + 49193 0.69 0.968961
Target:  5'- aGCAUGcacCUGCCGGugaagAGUCGCC--UCCUc -3'
miRNA:   3'- -UGUAUa--GACGGCC-----UUAGCGGuuAGGG- -5'
9738 5' -50.8 NC_002577.1 + 2686 0.69 0.965759
Target:  5'- cGCGUAUUcGUCGGGAcCGCCuuUCuCCg -3'
miRNA:   3'- -UGUAUAGaCGGCCUUaGCGGuuAG-GG- -5'
9738 5' -50.8 NC_002577.1 + 130928 0.69 0.965759
Target:  5'- cGCGUAUUcGUCGGGAcCGCCuuUCuCCg -3'
miRNA:   3'- -UGUAUAGaCGGCCUUaGCGGuuAG-GG- -5'
9738 5' -50.8 NC_002577.1 + 40010 0.7 0.954775
Target:  5'- aACGUAggCUGCCGGugauucgCGCCAA-CCg -3'
miRNA:   3'- -UGUAUa-GACGGCCuua----GCGGUUaGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.