Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9738 | 5' | -50.8 | NC_002577.1 | + | 140212 | 0.67 | 0.991441 |
Target: 5'- cGCGU---UGUCGGAcgcUCGCCGGUgCCCu -3' miRNA: 3'- -UGUAuagACGGCCUu--AGCGGUUA-GGG- -5' |
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9738 | 5' | -50.8 | NC_002577.1 | + | 112544 | 0.67 | 0.991441 |
Target: 5'- uGCAUcaaGUUUGCCGucGGA-CGCCGAUCUg -3' miRNA: 3'- -UGUA---UAGACGGC--CUUaGCGGUUAGGg -5' |
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9738 | 5' | -50.8 | NC_002577.1 | + | 1040 | 0.67 | 0.991441 |
Target: 5'- cGCGgggggCUGgCGGAGacCGCCucuGUCCCg -3' miRNA: 3'- -UGUaua--GACgGCCUUa-GCGGu--UAGGG- -5' |
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9738 | 5' | -50.8 | NC_002577.1 | + | 157126 | 0.67 | 0.991441 |
Target: 5'- cGCGU---UGUCGGAcgcUCGCCGGUgCCCu -3' miRNA: 3'- -UGUAuagACGGCCUu--AGCGGUUA-GGG- -5' |
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9738 | 5' | -50.8 | NC_002577.1 | + | 122601 | 0.66 | 0.992548 |
Target: 5'- cGCAgg-CgGCCGGGAagcgaUCGCgCGccGUCCCg -3' miRNA: 3'- -UGUauaGaCGGCCUU-----AGCG-GU--UAGGG- -5' |
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9738 | 5' | -50.8 | NC_002577.1 | + | 11013 | 0.66 | 0.992548 |
Target: 5'- cGCAgg-CgGCCGGGAagcgaUCGCgCGccGUCCCg -3' miRNA: 3'- -UGUauaGaCGGCCUU-----AGCG-GU--UAGGG- -5' |
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9738 | 5' | -50.8 | NC_002577.1 | + | 51682 | 0.66 | 0.995892 |
Target: 5'- gGCAUaAUCUGUCGGGAcuaGUguGUCCa -3' miRNA: 3'- -UGUA-UAGACGGCCUUag-CGguUAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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