miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9738 5' -50.8 NC_002577.1 + 140212 0.67 0.991441
Target:  5'- cGCGU---UGUCGGAcgcUCGCCGGUgCCCu -3'
miRNA:   3'- -UGUAuagACGGCCUu--AGCGGUUA-GGG- -5'
9738 5' -50.8 NC_002577.1 + 112544 0.67 0.991441
Target:  5'- uGCAUcaaGUUUGCCGucGGA-CGCCGAUCUg -3'
miRNA:   3'- -UGUA---UAGACGGC--CUUaGCGGUUAGGg -5'
9738 5' -50.8 NC_002577.1 + 1040 0.67 0.991441
Target:  5'- cGCGgggggCUGgCGGAGacCGCCucuGUCCCg -3'
miRNA:   3'- -UGUaua--GACgGCCUUa-GCGGu--UAGGG- -5'
9738 5' -50.8 NC_002577.1 + 157126 0.67 0.991441
Target:  5'- cGCGU---UGUCGGAcgcUCGCCGGUgCCCu -3'
miRNA:   3'- -UGUAuagACGGCCUu--AGCGGUUA-GGG- -5'
9738 5' -50.8 NC_002577.1 + 122601 0.66 0.992548
Target:  5'- cGCAgg-CgGCCGGGAagcgaUCGCgCGccGUCCCg -3'
miRNA:   3'- -UGUauaGaCGGCCUU-----AGCG-GU--UAGGG- -5'
9738 5' -50.8 NC_002577.1 + 11013 0.66 0.992548
Target:  5'- cGCAgg-CgGCCGGGAagcgaUCGCgCGccGUCCCg -3'
miRNA:   3'- -UGUauaGaCGGCCUU-----AGCG-GU--UAGGG- -5'
9738 5' -50.8 NC_002577.1 + 51682 0.66 0.995892
Target:  5'- gGCAUaAUCUGUCGGGAcuaGUguGUCCa -3'
miRNA:   3'- -UGUA-UAGACGGCCUUag-CGguUAGGg -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.