miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9738	5'	-50.8	NC_002577.1	+	117597	0.7	0.93674
	Target:  5'- gACAUGuUCUcagaCGGAuccGUCGCCAAUCCa -3' miRNA:   3'- -UGUAU-AGAcg--GCCU---UAGCGGUUAGGg -5'
9738	5'	-50.8	NC_002577.1	+	79259	0.71	0.92057
	Target:  5'- uGCAUAUUccgccauuuUGCCgGGAGUUGCCGgguGUCCa -3' miRNA:   3'- -UGUAUAG---------ACGG-CCUUAGCGGU---UAGGg -5'
9738	5'	-50.8	NC_002577.1	+	2895	0.72	0.901469
	Target:  5'- uACGUGUaggcuacCUGCCGGAGaaaGgCGGUCCCg -3' miRNA:   3'- -UGUAUA-------GACGGCCUUag-CgGUUAGGG- -5'
9738	5'	-50.8	NC_002577.1	+	123992	0.72	0.895475
	Target:  5'- uGCGUAcCUGCaCGGGAUUcCgGAUCCCg -3' miRNA:   3'- -UGUAUaGACG-GCCUUAGcGgUUAGGG- -5'
9738	5'	-50.8	NC_002577.1	+	9622	0.72	0.895475
	Target:  5'- uGCGUAcCUGCaCGGGAUUccggaucCCGAUCCCa -3' miRNA:   3'- -UGUAUaGACG-GCCUUAGc------GGUUAGGG- -5'
9738	5'	-50.8	NC_002577.1	+	102952	0.8	0.482037
	Target:  5'- aGCAUGUC-GCCGGAGUuguuuaCGCCAAcuucUCCCg -3' miRNA:   3'- -UGUAUAGaCGGCCUUA------GCGGUU----AGGG- -5'
9738	5'	-50.8	NC_002577.1	+	101232	1.13	0.005299
	Target:  5'- cACAUAUCUGCCGGAAUCGCCAAUCCCg -3' miRNA:   3'- -UGUAUAGACGGCCUUAGCGGUUAGGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home