Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9739 | 3' | -57.4 | NC_002577.1 | + | 161191 | 0.66 | 0.892879 |
Target: 5'- gCGcUCUCCGGUa-GGcAGAggcGGUUGGCGa -3' miRNA: 3'- -GC-AGAGGCCGagCCcUCU---UCAACCGC- -5' |
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9739 | 3' | -57.4 | NC_002577.1 | + | 136147 | 0.66 | 0.892879 |
Target: 5'- gCGcUCUCCGGUa-GGcAGAggcGGUUGGCGa -3' miRNA: 3'- -GC-AGAGGCCGagCCcUCU---UCAACCGC- -5' |
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9739 | 3' | -57.4 | NC_002577.1 | + | 135398 | 0.66 | 0.884239 |
Target: 5'- aGUCUUCGGCgagugaaggcuaagUCaggucGGGGggGggGGCGg -3' miRNA: 3'- gCAGAGGCCG--------------AGc----CCUCuuCaaCCGC- -5' |
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9739 | 3' | -57.4 | NC_002577.1 | + | 125574 | 0.68 | 0.773667 |
Target: 5'- gCGUUUCC-GCUCcgggccGGAGAGGcUGGCGg -3' miRNA: 3'- -GCAGAGGcCGAGc-----CCUCUUCaACCGC- -5' |
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9739 | 3' | -57.4 | NC_002577.1 | + | 8039 | 0.68 | 0.773667 |
Target: 5'- gCGUUUCC-GCUCcgggccGGAGAGGcUGGCGg -3' miRNA: 3'- -GCAGAGGcCGAGc-----CCUCUUCaACCGC- -5' |
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9739 | 3' | -57.4 | NC_002577.1 | + | 124115 | 0.69 | 0.736225 |
Target: 5'- gGUC-CCgcacgGGCUUGGGGGggGggGGgGg -3' miRNA: 3'- gCAGaGG-----CCGAGCCCUCuuCaaCCgC- -5' |
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9739 | 3' | -57.4 | NC_002577.1 | + | 134362 | 0.69 | 0.736225 |
Target: 5'- gGUCUCgGGgggGGGGGggGggGGCGc -3' miRNA: 3'- gCAGAGgCCgagCCCUCuuCaaCCGC- -5' |
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9739 | 3' | -57.4 | NC_002577.1 | + | 162965 | 0.69 | 0.736225 |
Target: 5'- gGUCUCgGGgggGGGGGggGggGGCGc -3' miRNA: 3'- gCAGAGgCCgagCCCUCuuCaaCCGC- -5' |
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9739 | 3' | -57.4 | NC_002577.1 | + | 9499 | 0.69 | 0.736225 |
Target: 5'- gGUC-CCgcacgGGCUUGGGGGggGggGGgGg -3' miRNA: 3'- gCAGaGG-----CCGAGCCCUCuuCaaCCgC- -5' |
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9739 | 3' | -57.4 | NC_002577.1 | + | 102741 | 1.08 | 0.002856 |
Target: 5'- cCGUCUCCGGCUCGGGAGAAGUUGGCGu -3' miRNA: 3'- -GCAGAGGCCGAGCCCUCUUCAACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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