miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9739 5' -50.6 NC_002577.1 + 45861 0.66 0.994965
Target:  5'- gGGCGGaccGUUAuGCGCG-GCAUAUUGg -3'
miRNA:   3'- -CCGCUguaCGAU-CGCGUuCGUAUAGC- -5'
9739 5' -50.6 NC_002577.1 + 97340 0.66 0.994965
Target:  5'- cGGCGAUugAUGCUgucagAGCGCAuaaaaauuGUGUCGg -3'
miRNA:   3'- -CCGCUG--UACGA-----UCGCGUucg-----UAUAGC- -5'
9739 5' -50.6 NC_002577.1 + 44344 0.66 0.994965
Target:  5'- aGGCGGCAcGUcaucGGCGacaAGGCAUAUgCGa -3'
miRNA:   3'- -CCGCUGUaCGa---UCGCg--UUCGUAUA-GC- -5'
9739 5' -50.6 NC_002577.1 + 62625 0.66 0.994147
Target:  5'- aGCGGCAUGUgggauguGCGCuacCAUGUCa -3'
miRNA:   3'- cCGCUGUACGau-----CGCGuucGUAUAGc -5'
9739 5' -50.6 NC_002577.1 + 135938 0.66 0.99219
Target:  5'- cGGCGACAucagucugUGCU-GCGgAAGCAacGUCc -3'
miRNA:   3'- -CCGCUGU--------ACGAuCGCgUUCGUa-UAGc -5'
9739 5' -50.6 NC_002577.1 + 123313 0.66 0.99219
Target:  5'- -cUGGCcgGCUcGGCGCGAGCcgGccUCGg -3'
miRNA:   3'- ccGCUGuaCGA-UCGCGUUCGuaU--AGC- -5'
9739 5' -50.6 NC_002577.1 + 161400 0.66 0.99219
Target:  5'- cGGCGACAucagucugUGCU-GCGgAAGCAacGUCc -3'
miRNA:   3'- -CCGCUGU--------ACGAuCGCgUUCGUa-UAGc -5'
9739 5' -50.6 NC_002577.1 + 10301 0.66 0.99219
Target:  5'- -cUGGCcgGCUcGGCGCGAGCcgGccUCGg -3'
miRNA:   3'- ccGCUGuaCGA-UCGCGUUCGuaU--AGC- -5'
9739 5' -50.6 NC_002577.1 + 34374 0.67 0.991033
Target:  5'- --aGACAUGUUAGCGUAucGGUGUAUg- -3'
miRNA:   3'- ccgCUGUACGAUCGCGU--UCGUAUAgc -5'
9739 5' -50.6 NC_002577.1 + 98405 0.67 0.989746
Target:  5'- aGCGGCGUGCgagccGCGUcuccgaGAGCGUAUa- -3'
miRNA:   3'- cCGCUGUACGau---CGCG------UUCGUAUAgc -5'
9739 5' -50.6 NC_002577.1 + 15399 0.67 0.986741
Target:  5'- -cCGACcggGUGCUAGCGCAagAGCucuuUCGc -3'
miRNA:   3'- ccGCUG---UACGAUCGCGU--UCGuau-AGC- -5'
9739 5' -50.6 NC_002577.1 + 72033 0.67 0.985005
Target:  5'- cGGCGGCAaugGCgagaucuacaAGCGCcGGCAUG-CGg -3'
miRNA:   3'- -CCGCUGUa--CGa---------UCGCGuUCGUAUaGC- -5'
9739 5' -50.6 NC_002577.1 + 53097 0.67 0.985005
Target:  5'- uGCG-CAUGCUcagGGCGCucaaugcGGCAUAUuCGg -3'
miRNA:   3'- cCGCuGUACGA---UCGCGu------UCGUAUA-GC- -5'
9739 5' -50.6 NC_002577.1 + 36437 0.67 0.985005
Target:  5'- uGGCGACgcGUGUcagagucGGCGCAAGCAa---- -3'
miRNA:   3'- -CCGCUG--UACGa------UCGCGUUCGUauagc -5'
9739 5' -50.6 NC_002577.1 + 163272 0.68 0.982901
Target:  5'- gGGCGGCcuaGCgAGCGCccgcgcggccggcGGGCAUGUCc -3'
miRNA:   3'- -CCGCUGua-CGaUCGCG-------------UUCGUAUAGc -5'
9739 5' -50.6 NC_002577.1 + 134056 0.68 0.982901
Target:  5'- gGGCGGCcuaGCgAGCGCccgcgcggccggcGGGCAUGUCc -3'
miRNA:   3'- -CCGCUGua-CGaUCGCG-------------UUCGUAUAGc -5'
9739 5' -50.6 NC_002577.1 + 76448 0.68 0.976291
Target:  5'- cGCGGCAccUGgUGGCaaaaaGCAGGCGgcgGUCGg -3'
miRNA:   3'- cCGCUGU--ACgAUCG-----CGUUCGUa--UAGC- -5'
9739 5' -50.6 NC_002577.1 + 8789 0.69 0.960791
Target:  5'- cGGCGAcCGUGgaAGuCGCGAGUuccgaccaGUGUCGc -3'
miRNA:   3'- -CCGCU-GUACgaUC-GCGUUCG--------UAUAGC- -5'
9739 5' -50.6 NC_002577.1 + 124824 0.69 0.960791
Target:  5'- cGGCGAcCGUGgaAGuCGCGAGUuccgaccaGUGUCGc -3'
miRNA:   3'- -CCGCU-GUACgaUC-GCGUUCG--------UAUAGC- -5'
9739 5' -50.6 NC_002577.1 + 4156 0.7 0.952976
Target:  5'- cGGCGAUAUGCUGGauCGUGAGaggugaguaCGUGUCu -3'
miRNA:   3'- -CCGCUGUACGAUC--GCGUUC---------GUAUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.