Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9739 | 5' | -50.6 | NC_002577.1 | + | 102778 | 1.04 | 0.019905 |
Target: 5'- cGGCGACAUGCUAGCGC-AGCAUAUCGg -3' miRNA: 3'- -CCGCUGUACGAUCGCGuUCGUAUAGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 102968 | 0.78 | 0.576039 |
Target: 5'- -cCGAUAUGCUuGCGCuAGCAUGUCGc -3' miRNA: 3'- ccGCUGUACGAuCGCGuUCGUAUAGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 41974 | 0.77 | 0.628941 |
Target: 5'- aGGgGACAUGCUAGCGCu-GCGcccgcUAUUGa -3' miRNA: 3'- -CCgCUGUACGAUCGCGuuCGU-----AUAGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 137805 | 0.74 | 0.783202 |
Target: 5'- cGGCGAUGUGCggUAGCGCccaAAGCAgauuUCGc -3' miRNA: 3'- -CCGCUGUACG--AUCGCG---UUCGUau--AGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 159532 | 0.74 | 0.783202 |
Target: 5'- cGGCGAUGUGCggUAGCGCccaAAGCAgauuUCGc -3' miRNA: 3'- -CCGCUGUACG--AUCGCG---UUCGUau--AGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 81285 | 0.74 | 0.811211 |
Target: 5'- cGGCGAC-UGCU-GCagaAAGCGUAUCGg -3' miRNA: 3'- -CCGCUGuACGAuCGcg-UUCGUAUAGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 142446 | 0.72 | 0.877584 |
Target: 5'- aGGUggGACGUGUUGGCGUGAGCGUu--- -3' miRNA: 3'- -CCG--CUGUACGAUCGCGUUCGUAuagc -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 154892 | 0.72 | 0.877584 |
Target: 5'- aGGUggGACGUGUUGGCGUGAGCGUu--- -3' miRNA: 3'- -CCG--CUGUACGAUCGCGUUCGUAuagc -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 50297 | 0.71 | 0.929074 |
Target: 5'- aGCGGgAauUGCUAGCaGCAGGCAauUCGu -3' miRNA: 3'- cCGCUgU--ACGAUCG-CGUUCGUauAGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 105055 | 0.7 | 0.934365 |
Target: 5'- cGGCGACAUcgaaacGCUAGCGUgcGCAc---- -3' miRNA: 3'- -CCGCUGUA------CGAUCGCGuuCGUauagc -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 140780 | 0.7 | 0.94826 |
Target: 5'- aGCGGCGUGCaGGCGCcggugggcuuacaGGGCGcGUCa -3' miRNA: 3'- cCGCUGUACGaUCGCG-------------UUCGUaUAGc -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 156557 | 0.7 | 0.94826 |
Target: 5'- aGCGGCGUGCaGGCGCcggugggcuuacaGGGCGcGUCa -3' miRNA: 3'- cCGCUGUACGaUCGCG-------------UUCGUaUAGc -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 129458 | 0.7 | 0.952976 |
Target: 5'- cGGCGAUAUGCUGGauCGUGAGaggugaguaCGUGUCu -3' miRNA: 3'- -CCGCUGUACGAUC--GCGUUC---------GUAUAGc -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 4156 | 0.7 | 0.952976 |
Target: 5'- cGGCGAUAUGCUGGauCGUGAGaggugaguaCGUGUCu -3' miRNA: 3'- -CCGCUGUACGAUC--GCGUUC---------GUAUAGc -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 124824 | 0.69 | 0.960791 |
Target: 5'- cGGCGAcCGUGgaAGuCGCGAGUuccgaccaGUGUCGc -3' miRNA: 3'- -CCGCU-GUACgaUC-GCGUUCG--------UAUAGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 8789 | 0.69 | 0.960791 |
Target: 5'- cGGCGAcCGUGgaAGuCGCGAGUuccgaccaGUGUCGc -3' miRNA: 3'- -CCGCU-GUACgaUC-GCGUUCG--------UAUAGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 76448 | 0.68 | 0.976291 |
Target: 5'- cGCGGCAccUGgUGGCaaaaaGCAGGCGgcgGUCGg -3' miRNA: 3'- cCGCUGU--ACgAUCG-----CGUUCGUa--UAGC- -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 163272 | 0.68 | 0.982901 |
Target: 5'- gGGCGGCcuaGCgAGCGCccgcgcggccggcGGGCAUGUCc -3' miRNA: 3'- -CCGCUGua-CGaUCGCG-------------UUCGUAUAGc -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 134056 | 0.68 | 0.982901 |
Target: 5'- gGGCGGCcuaGCgAGCGCccgcgcggccggcGGGCAUGUCc -3' miRNA: 3'- -CCGCUGua-CGaUCGCG-------------UUCGUAUAGc -5' |
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9739 | 5' | -50.6 | NC_002577.1 | + | 72033 | 0.67 | 0.985005 |
Target: 5'- cGGCGGCAaugGCgagaucuacaAGCGCcGGCAUG-CGg -3' miRNA: 3'- -CCGCUGUa--CGa---------UCGCGuUCGUAUaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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