miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9739 5' -50.6 NC_002577.1 + 129458 0.7 0.952976
Target:  5'- cGGCGAUAUGCUGGauCGUGAGaggugaguaCGUGUCu -3'
miRNA:   3'- -CCGCUGUACGAUC--GCGUUC---------GUAUAGc -5'
9739 5' -50.6 NC_002577.1 + 156557 0.7 0.94826
Target:  5'- aGCGGCGUGCaGGCGCcggugggcuuacaGGGCGcGUCa -3'
miRNA:   3'- cCGCUGUACGaUCGCG-------------UUCGUaUAGc -5'
9739 5' -50.6 NC_002577.1 + 140780 0.7 0.94826
Target:  5'- aGCGGCGUGCaGGCGCcggugggcuuacaGGGCGcGUCa -3'
miRNA:   3'- cCGCUGUACGaUCGCG-------------UUCGUaUAGc -5'
9739 5' -50.6 NC_002577.1 + 105055 0.7 0.934365
Target:  5'- cGGCGACAUcgaaacGCUAGCGUgcGCAc---- -3'
miRNA:   3'- -CCGCUGUA------CGAUCGCGuuCGUauagc -5'
9739 5' -50.6 NC_002577.1 + 50297 0.71 0.929074
Target:  5'- aGCGGgAauUGCUAGCaGCAGGCAauUCGu -3'
miRNA:   3'- cCGCUgU--ACGAUCG-CGUUCGUauAGC- -5'
9739 5' -50.6 NC_002577.1 + 142446 0.72 0.877584
Target:  5'- aGGUggGACGUGUUGGCGUGAGCGUu--- -3'
miRNA:   3'- -CCG--CUGUACGAUCGCGUUCGUAuagc -5'
9739 5' -50.6 NC_002577.1 + 154892 0.72 0.877584
Target:  5'- aGGUggGACGUGUUGGCGUGAGCGUu--- -3'
miRNA:   3'- -CCG--CUGUACGAUCGCGUUCGUAuagc -5'
9739 5' -50.6 NC_002577.1 + 81285 0.74 0.811211
Target:  5'- cGGCGAC-UGCU-GCagaAAGCGUAUCGg -3'
miRNA:   3'- -CCGCUGuACGAuCGcg-UUCGUAUAGC- -5'
9739 5' -50.6 NC_002577.1 + 159532 0.74 0.783202
Target:  5'- cGGCGAUGUGCggUAGCGCccaAAGCAgauuUCGc -3'
miRNA:   3'- -CCGCUGUACG--AUCGCG---UUCGUau--AGC- -5'
9739 5' -50.6 NC_002577.1 + 137805 0.74 0.783202
Target:  5'- cGGCGAUGUGCggUAGCGCccaAAGCAgauuUCGc -3'
miRNA:   3'- -CCGCUGUACG--AUCGCG---UUCGUau--AGC- -5'
9739 5' -50.6 NC_002577.1 + 41974 0.77 0.628941
Target:  5'- aGGgGACAUGCUAGCGCu-GCGcccgcUAUUGa -3'
miRNA:   3'- -CCgCUGUACGAUCGCGuuCGU-----AUAGC- -5'
9739 5' -50.6 NC_002577.1 + 102968 0.78 0.576039
Target:  5'- -cCGAUAUGCUuGCGCuAGCAUGUCGc -3'
miRNA:   3'- ccGCUGUACGAuCGCGuUCGUAUAGC- -5'
9739 5' -50.6 NC_002577.1 + 102778 1.04 0.019905
Target:  5'- cGGCGACAUGCUAGCGC-AGCAUAUCGg -3'
miRNA:   3'- -CCGCUGUACGAUCGCGuUCGUAUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.