Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9741 | 3' | -53.1 | NC_002577.1 | + | 157081 | 0.66 | 0.983608 |
Target: 5'- --cGCUCGauuuaCGGCGggcUGGGAcUCGGu -3' miRNA: 3'- guaCGAGUg----GCCGUaa-GCCCUuAGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 49755 | 0.66 | 0.983608 |
Target: 5'- uGUGCUCuACa-GCGUgCGGGAAgggCGGu -3' miRNA: 3'- gUACGAG-UGgcCGUAaGCCCUUa--GCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 163070 | 0.66 | 0.977166 |
Target: 5'- aCAUGCcCGCCGGCcgcgCGGGcgcUCGc -3' miRNA: 3'- -GUACGaGUGGCCGuaa-GCCCuu-AGCc -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 66867 | 0.66 | 0.983608 |
Target: 5'- -uUGCUCGCCGGUuguUUCGaacGAcgUGGc -3' miRNA: 3'- guACGAGUGGCCGu--AAGCc--CUuaGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 140257 | 0.66 | 0.983608 |
Target: 5'- --cGCUCGauuuaCGGCGggcUGGGAcUCGGu -3' miRNA: 3'- guaCGAGUg----GCCGUaa-GCCCUuAGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 134258 | 0.66 | 0.977165 |
Target: 5'- aCAUGCcCGCCGGCcgcgCGGGcgcUCGc -3' miRNA: 3'- -GUACGaGUGGCCGuaa-GCCCuu-AGCc -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 147724 | 0.66 | 0.981636 |
Target: 5'- gGUGgagCGUCGGCg--CGGGAAUCGGu -3' miRNA: 3'- gUACga-GUGGCCGuaaGCCCUUAGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 157786 | 0.67 | 0.968422 |
Target: 5'- cCGUGCUUuCCGGCGUgcgcgccgccgcCGGGcg-CGGg -3' miRNA: 3'- -GUACGAGuGGCCGUAa-----------GCCCuuaGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 30955 | 0.67 | 0.971942 |
Target: 5'- cCAUGCUuuuUugCGGCcgUCGuGGAcuaCGGg -3' miRNA: 3'- -GUACGA---GugGCCGuaAGC-CCUua-GCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 109392 | 0.67 | 0.971942 |
Target: 5'- aGUGU--GCCGGC-UUCGGGucgagCGGg -3' miRNA: 3'- gUACGagUGGCCGuAAGCCCuua--GCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 97479 | 0.67 | 0.969029 |
Target: 5'- aCGUGCUacUACCGuGCAcgUCGGGAAa--- -3' miRNA: 3'- -GUACGA--GUGGC-CGUa-AGCCCUUagcc -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 139551 | 0.67 | 0.968422 |
Target: 5'- cCGUGCUUuCCGGCGUgcgcgccgccgcCGGGcg-CGGg -3' miRNA: 3'- -GUACGAGuGGCCGUAa-----------GCCCuuaGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 16031 | 0.67 | 0.959014 |
Target: 5'- cCGUGCUCACaagaaCGGUcaUCGGGGAUg-- -3' miRNA: 3'- -GUACGAGUG-----GCCGuaAGCCCUUAgcc -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 101163 | 0.69 | 0.916455 |
Target: 5'- gGUGcCUC-CaaaaGGCGUUCGGGGGgcguuUCGGg -3' miRNA: 3'- gUAC-GAGuGg---CCGUAAGCCCUU-----AGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 84891 | 0.69 | 0.910523 |
Target: 5'- aCAUGCaaaACCGcgccauGCGUUCGGGAAcaaacauggauUCGGa -3' miRNA: 3'- -GUACGag-UGGC------CGUAAGCCCUU-----------AGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 15401 | 0.69 | 0.916455 |
Target: 5'- --cGCUUGCC-GCcgUCaGGAAUCGGa -3' miRNA: 3'- guaCGAGUGGcCGuaAGcCCUUAGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 121913 | 0.7 | 0.884422 |
Target: 5'- --aGCcgGCCGGCcugcaGUUCGGGAAgagCGGg -3' miRNA: 3'- guaCGagUGGCCG-----UAAGCCCUUa--GCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 157138 | 0.7 | 0.869996 |
Target: 5'- --cGCUCGCCGGUGcccUUCcuacuGGGAUCGGc -3' miRNA: 3'- guaCGAGUGGCCGU---AAGc----CCUUAGCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 11700 | 0.7 | 0.884421 |
Target: 5'- --aGCcgGCCGGCcugcaGUUCGGGAAgagCGGg -3' miRNA: 3'- guaCGagUGGCCG-----UAAGCCCUUa--GCC- -5' |
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9741 | 3' | -53.1 | NC_002577.1 | + | 140200 | 0.7 | 0.869995 |
Target: 5'- --cGCUCGCCGGUGcccUUCcuacuGGGAUCGGc -3' miRNA: 3'- guaCGAGUGGCCGU---AAGc----CCUUAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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