miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9741 5' -50.6 NC_002577.1 + 160369 0.66 0.996823
Target:  5'- cGGCCCUCggaCGuu---CCGGAagAGGc -3'
miRNA:   3'- -CCGGGAGaagGCuaaauGGCCUa-UCC- -5'
9741 5' -50.6 NC_002577.1 + 136968 0.66 0.996823
Target:  5'- cGGCCCUCggaCGuu---CCGGAagAGGc -3'
miRNA:   3'- -CCGGGAGaagGCuaaauGGCCUa-UCC- -5'
9741 5' -50.6 NC_002577.1 + 138169 0.66 0.996718
Target:  5'- aGGCCCgaaccagcaCCGGccgGCCGGcgGGGa -3'
miRNA:   3'- -CCGGGagaa-----GGCUaaaUGGCCuaUCC- -5'
9741 5' -50.6 NC_002577.1 + 159169 0.66 0.996718
Target:  5'- aGGCCCgaaccagcaCCGGccgGCCGGcgGGGa -3'
miRNA:   3'- -CCGGGagaa-----GGCUaaaUGGCCuaUCC- -5'
9741 5' -50.6 NC_002577.1 + 3594 0.66 0.996664
Target:  5'- gGGCCCUCUcucgccccuccgcgUCCGAUaUGCa-GAUcGGu -3'
miRNA:   3'- -CCGGGAGA--------------AGGCUAaAUGgcCUAuCC- -5'
9741 5' -50.6 NC_002577.1 + 130020 0.66 0.996664
Target:  5'- gGGCCCUCUcucgccccuccgcgUCCGAUaUGCa-GAUcGGu -3'
miRNA:   3'- -CCGGGAGA--------------AGGCUAaAUGgcCUAuCC- -5'
9741 5' -50.6 NC_002577.1 + 58178 0.67 0.995221
Target:  5'- cGGCCgUCUUCUGGcg-GCCGcGAaaauacaugugguauUGGGa -3'
miRNA:   3'- -CCGGgAGAAGGCUaaaUGGC-CU---------------AUCC- -5'
9741 5' -50.6 NC_002577.1 + 140245 0.67 0.994118
Target:  5'- cGCCCUCggaaacgCuCGAUUUACggCGGGcUGGGa -3'
miRNA:   3'- cCGGGAGaa-----G-GCUAAAUG--GCCU-AUCC- -5'
9741 5' -50.6 NC_002577.1 + 112068 0.67 0.994118
Target:  5'- gGGCCCUUgacggCCGAUUcccgaaUGCCGGugAGc -3'
miRNA:   3'- -CCGGGAGaa---GGCUAA------AUGGCCuaUCc -5'
9741 5' -50.6 NC_002577.1 + 157093 0.67 0.994118
Target:  5'- cGCCCUCggaaacgCuCGAUUUACggCGGGcUGGGa -3'
miRNA:   3'- cCGGGAGaa-----G-GCUAAAUG--GCCU-AUCC- -5'
9741 5' -50.6 NC_002577.1 + 158479 0.68 0.989807
Target:  5'- gGGCCgUC-UCCGAg--GCCGGGc--- -3'
miRNA:   3'- -CCGGgAGaAGGCUaaaUGGCCUaucc -5'
9741 5' -50.6 NC_002577.1 + 138859 0.68 0.989807
Target:  5'- gGGCCgUC-UCCGAg--GCCGGGc--- -3'
miRNA:   3'- -CCGGgAGaAGGCUaaaUGGCCUaucc -5'
9741 5' -50.6 NC_002577.1 + 720 0.68 0.983346
Target:  5'- cGCaCUCUUCCGuugaaggACgGGGUGGGa -3'
miRNA:   3'- cCGgGAGAAGGCuaaa---UGgCCUAUCC- -5'
9741 5' -50.6 NC_002577.1 + 132893 0.68 0.983346
Target:  5'- cGCaCUCUUCCGuugaaggACgGGGUGGGa -3'
miRNA:   3'- cCGgGAGAAGGCuaaa---UGgCCUAUCC- -5'
9741 5' -50.6 NC_002577.1 + 11666 0.69 0.979135
Target:  5'- aGGCgCCg--UCCGAggccGCCGGggAGGa -3'
miRNA:   3'- -CCG-GGagaAGGCUaaa-UGGCCuaUCC- -5'
9741 5' -50.6 NC_002577.1 + 121947 0.69 0.979135
Target:  5'- aGGCgCCg--UCCGAggccGCCGGggAGGa -3'
miRNA:   3'- -CCG-GGagaAGGCUaaa-UGGCCuaUCC- -5'
9741 5' -50.6 NC_002577.1 + 110241 0.71 0.945828
Target:  5'- uGGCCaaaUCUucuauuaugUCCGAUaUACCGGAggaugccgacccUGGGa -3'
miRNA:   3'- -CCGGg--AGA---------AGGCUAaAUGGCCU------------AUCC- -5'
9741 5' -50.6 NC_002577.1 + 134691 0.72 0.920403
Target:  5'- cGGCCC-CgUCCGAcUUUGCCGuGggAGGc -3'
miRNA:   3'- -CCGGGaGaAGGCU-AAAUGGC-CuaUCC- -5'
9741 5' -50.6 NC_002577.1 + 162637 0.72 0.920403
Target:  5'- cGGCCC-CgUCCGAcUUUGCCGuGggAGGc -3'
miRNA:   3'- -CCGGGaGaAGGCU-AAAUGGC-CuaUCC- -5'
9741 5' -50.6 NC_002577.1 + 111899 1.13 0.00719
Target:  5'- gGGCCCUCUUCCGAUUUACCGGAUAGGc -3'
miRNA:   3'- -CCGGGAGAAGGCUAAAUGGCCUAUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.