Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9741 | 5' | -50.6 | NC_002577.1 | + | 160369 | 0.66 | 0.996823 |
Target: 5'- cGGCCCUCggaCGuu---CCGGAagAGGc -3' miRNA: 3'- -CCGGGAGaagGCuaaauGGCCUa-UCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 138169 | 0.66 | 0.996718 |
Target: 5'- aGGCCCgaaccagcaCCGGccgGCCGGcgGGGa -3' miRNA: 3'- -CCGGGagaa-----GGCUaaaUGGCCuaUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 3594 | 0.66 | 0.996664 |
Target: 5'- gGGCCCUCUcucgccccuccgcgUCCGAUaUGCa-GAUcGGu -3' miRNA: 3'- -CCGGGAGA--------------AGGCUAaAUGgcCUAuCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 136968 | 0.66 | 0.996823 |
Target: 5'- cGGCCCUCggaCGuu---CCGGAagAGGc -3' miRNA: 3'- -CCGGGAGaagGCuaaauGGCCUa-UCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 130020 | 0.66 | 0.996664 |
Target: 5'- gGGCCCUCUcucgccccuccgcgUCCGAUaUGCa-GAUcGGu -3' miRNA: 3'- -CCGGGAGA--------------AGGCUAaAUGgcCUAuCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 159169 | 0.66 | 0.996718 |
Target: 5'- aGGCCCgaaccagcaCCGGccgGCCGGcgGGGa -3' miRNA: 3'- -CCGGGagaa-----GGCUaaaUGGCCuaUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 112068 | 0.67 | 0.994118 |
Target: 5'- gGGCCCUUgacggCCGAUUcccgaaUGCCGGugAGc -3' miRNA: 3'- -CCGGGAGaa---GGCUAA------AUGGCCuaUCc -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 140245 | 0.67 | 0.994118 |
Target: 5'- cGCCCUCggaaacgCuCGAUUUACggCGGGcUGGGa -3' miRNA: 3'- cCGGGAGaa-----G-GCUAAAUG--GCCU-AUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 58178 | 0.67 | 0.995221 |
Target: 5'- cGGCCgUCUUCUGGcg-GCCGcGAaaauacaugugguauUGGGa -3' miRNA: 3'- -CCGGgAGAAGGCUaaaUGGC-CU---------------AUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 157093 | 0.67 | 0.994118 |
Target: 5'- cGCCCUCggaaacgCuCGAUUUACggCGGGcUGGGa -3' miRNA: 3'- cCGGGAGaa-----G-GCUAAAUG--GCCU-AUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 720 | 0.68 | 0.983346 |
Target: 5'- cGCaCUCUUCCGuugaaggACgGGGUGGGa -3' miRNA: 3'- cCGgGAGAAGGCuaaa---UGgCCUAUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 138859 | 0.68 | 0.989807 |
Target: 5'- gGGCCgUC-UCCGAg--GCCGGGc--- -3' miRNA: 3'- -CCGGgAGaAGGCUaaaUGGCCUaucc -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 132893 | 0.68 | 0.983346 |
Target: 5'- cGCaCUCUUCCGuugaaggACgGGGUGGGa -3' miRNA: 3'- cCGgGAGAAGGCuaaa---UGgCCUAUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 158479 | 0.68 | 0.989807 |
Target: 5'- gGGCCgUC-UCCGAg--GCCGGGc--- -3' miRNA: 3'- -CCGGgAGaAGGCUaaaUGGCCUaucc -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 11666 | 0.69 | 0.979135 |
Target: 5'- aGGCgCCg--UCCGAggccGCCGGggAGGa -3' miRNA: 3'- -CCG-GGagaAGGCUaaa-UGGCCuaUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 121947 | 0.69 | 0.979135 |
Target: 5'- aGGCgCCg--UCCGAggccGCCGGggAGGa -3' miRNA: 3'- -CCG-GGagaAGGCUaaa-UGGCCuaUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 110241 | 0.71 | 0.945828 |
Target: 5'- uGGCCaaaUCUucuauuaugUCCGAUaUACCGGAggaugccgacccUGGGa -3' miRNA: 3'- -CCGGg--AGA---------AGGCUAaAUGGCCU------------AUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 134691 | 0.72 | 0.920403 |
Target: 5'- cGGCCC-CgUCCGAcUUUGCCGuGggAGGc -3' miRNA: 3'- -CCGGGaGaAGGCU-AAAUGGC-CuaUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 162637 | 0.72 | 0.920403 |
Target: 5'- cGGCCC-CgUCCGAcUUUGCCGuGggAGGc -3' miRNA: 3'- -CCGGGaGaAGGCU-AAAUGGC-CuaUCC- -5' |
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9741 | 5' | -50.6 | NC_002577.1 | + | 111899 | 1.13 | 0.00719 |
Target: 5'- gGGCCCUCUUCCGAUUUACCGGAUAGGc -3' miRNA: 3'- -CCGGGAGAAGGCUAAAUGGCCUAUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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