miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9742 5' -53.2 NC_002577.1 + 123706 0.67 0.959931
Target:  5'- uUACCacauGGAcggGCCGCGGcGUcgcggcguuUCCCACa -3'
miRNA:   3'- gAUGGau--CCU---UGGUGCCaCA---------AGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 9908 0.67 0.959931
Target:  5'- uUACCacauGGAcggGCCGCGGcGUcgcggcguuUCCCACa -3'
miRNA:   3'- gAUGGau--CCU---UGGUGCCaCA---------AGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 45819 0.67 0.959931
Target:  5'- -gGCCUggaugucaAGGAGaugugCGCGG-GUUCCCGCc -3'
miRNA:   3'- gaUGGA--------UCCUUg----GUGCCaCAAGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 135812 0.67 0.958457
Target:  5'- -cACgUAGG-ACCACGGggcccagcacgUCCCGCg -3'
miRNA:   3'- gaUGgAUCCuUGGUGCCaca--------AGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 161525 0.67 0.958456
Target:  5'- -cACgUAGG-ACCACGGggcccagcacgUCCCGCg -3'
miRNA:   3'- gaUGgAUCCuUGGUGCCaca--------AGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 10973 0.67 0.947961
Target:  5'- -gGCCaGGGAACgACGGUc--CCCGCc -3'
miRNA:   3'- gaUGGaUCCUUGgUGCCAcaaGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 134760 0.68 0.938787
Target:  5'- --uCCaGGGGGCCACGGcuccGcgCCCGCg -3'
miRNA:   3'- gauGGaUCCUUGGUGCCa---CaaGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 162568 0.68 0.938787
Target:  5'- --uCCaGGGGGCCACGGcuccGcgCCCGCg -3'
miRNA:   3'- gauGGaUCCUUGGUGCCa---CaaGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 106435 0.68 0.933835
Target:  5'- -aGCCguccuuuguuaaUGGGGGCCGCGGgacuuccaUCCCGCa -3'
miRNA:   3'- gaUGG------------AUCCUUGGUGCCaca-----AGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 116833 0.69 0.905381
Target:  5'- aCUACCUaAGGAACUACuGUgGUUCCUu- -3'
miRNA:   3'- -GAUGGA-UCCUUGGUGcCA-CAAGGGug -5'
9742 5' -53.2 NC_002577.1 + 132470 0.71 0.839359
Target:  5'- -cGCUUGGGAACCGCGGa----CCGCa -3'
miRNA:   3'- gaUGGAUCCUUGGUGCCacaagGGUG- -5'
9742 5' -53.2 NC_002577.1 + 1143 0.71 0.839359
Target:  5'- -cGCUUGGGAACCGCGGa----CCGCa -3'
miRNA:   3'- gaUGGAUCCUUGGUGCCacaagGGUG- -5'
9742 5' -53.2 NC_002577.1 + 129647 0.71 0.79561
Target:  5'- -gACCUGGGAgGCCuaGCuGUGUUCUCGCu -3'
miRNA:   3'- gaUGGAUCCU-UGG--UGcCACAAGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 3967 0.71 0.79561
Target:  5'- -gACCUGGGAgGCCuaGCuGUGUUCUCGCu -3'
miRNA:   3'- gaUGGAUCCU-UGG--UGcCACAAGGGUG- -5'
9742 5' -53.2 NC_002577.1 + 116676 1.1 0.004574
Target:  5'- uCUACCUAGGAACCACGGUGUUCCCACg -3'
miRNA:   3'- -GAUGGAUCCUUGGUGCCACAAGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.