Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9744 | 5' | -64.4 | NC_002577.1 | + | 52370 | 0.66 | 0.529729 |
Target: 5'- -cUCCGUaUGGucgcugcuagacauCCGGagaCCGCCGUCCGu -3' miRNA: 3'- caAGGCG-ACC--------------GGCCg--GGCGGCAGGCu -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 47149 | 0.67 | 0.504928 |
Target: 5'- --cCCGUugacgaccaUGGCCGGaugCCGCUGUCCu- -3' miRNA: 3'- caaGGCG---------ACCGGCCg--GGCGGCAGGcu -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 11700 | 0.67 | 0.486885 |
Target: 5'- ----aGCcGGCCGGCCUGCaGUUCGGg -3' miRNA: 3'- caaggCGaCCGGCCGGGCGgCAGGCU- -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 138362 | 0.68 | 0.451756 |
Target: 5'- --cCCGCcGGCCGGCCggUGCUgGUUCGGg -3' miRNA: 3'- caaGGCGaCCGGCCGG--GCGG-CAGGCU- -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 123506 | 0.68 | 0.418058 |
Target: 5'- -cUCCGa-GGCCGGCUcgCGCCGagCCGGc -3' miRNA: 3'- caAGGCgaCCGGCCGG--GCGGCa-GGCU- -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 123045 | 0.7 | 0.340909 |
Target: 5'- uGUUCCGCgagcGGCguuCGGCCgCGUCG-CCGAc -3' miRNA: 3'- -CAAGGCGa---CCG---GCCGG-GCGGCaGGCU- -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 10320 | 0.71 | 0.313067 |
Target: 5'- aGUUCCGaagugacuuuguCUGGCCGGCUCGgCGcgagCCGGc -3' miRNA: 3'- -CAAGGC------------GACCGGCCGGGCgGCa---GGCU- -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 135224 | 0.71 | 0.293982 |
Target: 5'- cGUUCCGCgcuguuagucguacgGGCCgcGGUCUGCCGUgCGGa -3' miRNA: 3'- -CAAGGCGa--------------CCGG--CCGGGCGGCAgGCU- -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 105956 | 0.73 | 0.214026 |
Target: 5'- --gCCGCgcugggaaGGCCGGCCCGUCGUgUGGc -3' miRNA: 3'- caaGGCGa-------CCGGCCGGGCGGCAgGCU- -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 159059 | 0.74 | 0.199624 |
Target: 5'- --cCCGCcGGCCgcGGCCgCGCCGUCCu- -3' miRNA: 3'- caaGGCGaCCGG--CCGG-GCGGCAGGcu -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 137692 | 0.74 | 0.18174 |
Target: 5'- --aCCGaUUGGUCGcGCCCGCgCGUCCGGa -3' miRNA: 3'- caaGGC-GACCGGC-CGGGCG-GCAGGCU- -5' |
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9744 | 5' | -64.4 | NC_002577.1 | + | 163255 | 0.66 | 0.579584 |
Target: 5'- --cCCGCgcGGCCGGCggGCaUGUCCGGc -3' miRNA: 3'- caaGGCGa-CCGGCCGggCG-GCAGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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