Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
975 | 3' | -50.5 | NC_000902.1 | + | 35319 | 0.68 | 0.859668 |
Target: 5'- cCCACCAcgguauaacGCAGCAgaacauucagggUGCCGGUuGCAgCGg -3' miRNA: 3'- -GGUGGU---------UGUUGUa-----------AUGGCCGuCGU-GC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 49114 | 0.69 | 0.85284 |
Target: 5'- -aGCCAGCAAUucaggaucgGUUGCCaGCuGCGCGc -3' miRNA: 3'- ggUGGUUGUUG---------UAAUGGcCGuCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 40953 | 0.69 | 0.85284 |
Target: 5'- gUCGCCAgcGCGACAUUACCGuuuGCAUc -3' miRNA: 3'- -GGUGGU--UGUUGUAAUGGCcguCGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 20700 | 0.69 | 0.835105 |
Target: 5'- gCGCCAGCcuuCGaaGCUGGCuGCGCGg -3' miRNA: 3'- gGUGGUUGuu-GUaaUGGCCGuCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 45514 | 0.69 | 0.835105 |
Target: 5'- ---aCGACAAUAUUGCUGGCAcCACa -3' miRNA: 3'- ggugGUUGUUGUAAUGGCCGUcGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 46058 | 0.69 | 0.816477 |
Target: 5'- aCCGCCcACAGgGUgACUGGCAG-ACGu -3' miRNA: 3'- -GGUGGuUGUUgUAaUGGCCGUCgUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 55260 | 0.7 | 0.787043 |
Target: 5'- gCCGCCuGCuGGCGUgacaaACCGGCAuCACGg -3' miRNA: 3'- -GGUGGuUG-UUGUAa----UGGCCGUcGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 49361 | 0.7 | 0.787043 |
Target: 5'- aCCGCCAuGCGugAUgcugaaACCGuGCAGCAgGa -3' miRNA: 3'- -GGUGGU-UGUugUAa-----UGGC-CGUCGUgC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 35163 | 0.7 | 0.766559 |
Target: 5'- aCACCAcACAGCGUgACgGGgAGCugGu -3' miRNA: 3'- gGUGGU-UGUUGUAaUGgCCgUCGugC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 4067 | 0.7 | 0.766559 |
Target: 5'- gCCGCCAuACcgUAUUGCa-GCGGCACGa -3' miRNA: 3'- -GGUGGU-UGuuGUAAUGgcCGUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 51582 | 0.71 | 0.734777 |
Target: 5'- gCCACCAaccGCGACcgUACCGGacCAGaACGc -3' miRNA: 3'- -GGUGGU---UGUUGuaAUGGCC--GUCgUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 48722 | 0.71 | 0.72395 |
Target: 5'- aCCGCCAGCAACcaUAUCaGGUacaAGCGCa -3' miRNA: 3'- -GGUGGUUGUUGuaAUGG-CCG---UCGUGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 58037 | 0.71 | 0.72395 |
Target: 5'- aCACCAaaGCAcgGUUGCgGGCAGCAa- -3' miRNA: 3'- gGUGGU--UGUugUAAUGgCCGUCGUgc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 48610 | 0.71 | 0.72395 |
Target: 5'- gCAcCCGGCGACAUcuUACCGGuCAGC-Ca -3' miRNA: 3'- gGU-GGUUGUUGUA--AUGGCC-GUCGuGc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 53303 | 0.72 | 0.657409 |
Target: 5'- gCACCAAgGugacGCAaUACCGGCGGCguACGc -3' miRNA: 3'- gGUGGUUgU----UGUaAUGGCCGUCG--UGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 24602 | 0.74 | 0.545593 |
Target: 5'- aCCGCCAGCGACAggaauggacGCUGGCGGUg-- -3' miRNA: 3'- -GGUGGUUGUUGUaa-------UGGCCGUCGugc -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 47637 | 0.75 | 0.502355 |
Target: 5'- -gGCCAGCAACG-UAgCGGCGGaCGCGa -3' miRNA: 3'- ggUGGUUGUUGUaAUgGCCGUC-GUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 39946 | 0.78 | 0.383281 |
Target: 5'- uCCGCCAguACAGCGgaaUGCUcgGGCAGCAUGg -3' miRNA: 3'- -GGUGGU--UGUUGUa--AUGG--CCGUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 36913 | 0.79 | 0.323027 |
Target: 5'- gCCACCGGCAGCAUccuUACUGaaAGCGCGa -3' miRNA: 3'- -GGUGGUUGUUGUA---AUGGCcgUCGUGC- -5' |
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975 | 3' | -50.5 | NC_000902.1 | + | 55738 | 1.13 | 0.001955 |
Target: 5'- aCCACCAACAACAUUACCGGCAGCACGg -3' miRNA: 3'- -GGUGGUUGUUGUAAUGGCCGUCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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