Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
975 | 5' | -58.8 | NC_000902.1 | + | 37678 | 0.66 | 0.548747 |
Target: 5'- cUCuCCUGCgccaGCCugGCCUuuUCAGCAu -3' miRNA: 3'- cAGuGGGCGg---CGGugUGGA--AGUCGUc -5' |
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975 | 5' | -58.8 | NC_000902.1 | + | 38698 | 0.67 | 0.446795 |
Target: 5'- gGUCGCCCccaccggGCCuGCCGCACCUguuucuccuuUCGGUc- -3' miRNA: 3'- -CAGUGGG-------CGG-CGGUGUGGA----------AGUCGuc -5' |
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975 | 5' | -58.8 | NC_000902.1 | + | 50170 | 0.68 | 0.419482 |
Target: 5'- cUUGCCCGUgGCaaCGCGCCgaCGGCAGa -3' miRNA: 3'- cAGUGGGCGgCG--GUGUGGaaGUCGUC- -5' |
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975 | 5' | -58.8 | NC_000902.1 | + | 50106 | 0.68 | 0.392319 |
Target: 5'- ---uUCCGuuGCCACAUCUUCAgagaacGCAGg -3' miRNA: 3'- caguGGGCggCGGUGUGGAAGU------CGUC- -5' |
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975 | 5' | -58.8 | NC_000902.1 | + | 49580 | 0.69 | 0.35793 |
Target: 5'- cGUCACCCucuGuuGCCAUAuCCgcaUCAGCAu -3' miRNA: 3'- -CAGUGGG---CggCGGUGU-GGa--AGUCGUc -5' |
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975 | 5' | -58.8 | NC_000902.1 | + | 48743 | 0.7 | 0.333558 |
Target: 5'- aUCACCCaCCuuucuaGCCACACCgcCAGCAa -3' miRNA: 3'- cAGUGGGcGG------CGGUGUGGaaGUCGUc -5' |
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975 | 5' | -58.8 | NC_000902.1 | + | 28220 | 0.7 | 0.325709 |
Target: 5'- uUCACCCGggcCCG-CGCACUUUCAGUAa -3' miRNA: 3'- cAGUGGGC---GGCgGUGUGGAAGUCGUc -5' |
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975 | 5' | -58.8 | NC_000902.1 | + | 29272 | 0.72 | 0.224325 |
Target: 5'- aUCACCa--C-CCACGCCUUCAGCAGu -3' miRNA: 3'- cAGUGGgcgGcGGUGUGGAAGUCGUC- -5' |
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975 | 5' | -58.8 | NC_000902.1 | + | 4077 | 0.74 | 0.1637 |
Target: 5'- -aCACCaaagCGCCGCCAUACCguauugCAGCGGc -3' miRNA: 3'- caGUGG----GCGGCGGUGUGGaa----GUCGUC- -5' |
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975 | 5' | -58.8 | NC_000902.1 | + | 55700 | 1.07 | 0.00061 |
Target: 5'- gGUCACCCGCCGCCACACCUUCAGCAGu -3' miRNA: 3'- -CAGUGGGCGGCGGUGUGGAAGUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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