miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9759 5' -56.9 NC_002577.1 + 137585 0.66 0.911399
Target:  5'- gUCGUggcggcgcuucUGCGcGGA-CCCGACGGUccgGGCGc -3'
miRNA:   3'- gAGCA-----------ACGU-CCUaGGGCUGCCG---CUGC- -5'
9759 5' -56.9 NC_002577.1 + 159752 0.66 0.911399
Target:  5'- gUCGUggcggcgcuucUGCGcGGA-CCCGACGGUccgGGCGc -3'
miRNA:   3'- gAGCA-----------ACGU-CCUaGGGCUGCCG---CUGC- -5'
9759 5' -56.9 NC_002577.1 + 122655 0.66 0.905449
Target:  5'- -gCGUUcGCgGGGGUCgCCGACGG-GugGa -3'
miRNA:   3'- gaGCAA-CG-UCCUAG-GGCUGCCgCugC- -5'
9759 5' -56.9 NC_002577.1 + 136807 0.66 0.905449
Target:  5'- -gCGgacGCGGGuUCUCGACGGCGuuGu -3'
miRNA:   3'- gaGCaa-CGUCCuAGGGCUGCCGCugC- -5'
9759 5' -56.9 NC_002577.1 + 84254 0.66 0.905449
Target:  5'- -aCGUccuaUGC-GGAUCCCucGACGGCGcCa -3'
miRNA:   3'- gaGCA----ACGuCCUAGGG--CUGCCGCuGc -5'
9759 5' -56.9 NC_002577.1 + 10959 0.66 0.905449
Target:  5'- -gCGUUcGCgGGGGUCgCCGACGG-GugGa -3'
miRNA:   3'- gaGCAA-CG-UCCUAG-GGCUGCCgCugC- -5'
9759 5' -56.9 NC_002577.1 + 160530 0.66 0.905449
Target:  5'- -gCGgacGCGGGuUCUCGACGGCGuuGu -3'
miRNA:   3'- gaGCaa-CGUCCuAGGGCUGCCGCugC- -5'
9759 5' -56.9 NC_002577.1 + 131529 0.66 0.892879
Target:  5'- cCUCGggGuUAGGGUCUCa--GGCGGCGu -3'
miRNA:   3'- -GAGCaaC-GUCCUAGGGcugCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 2085 0.66 0.892879
Target:  5'- cCUCGggGUuAGGGUCUCa--GGCGGCGu -3'
miRNA:   3'- -GAGCaaCG-UCCUAGGGcugCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 160638 0.66 0.892879
Target:  5'- gCUUGg-GCGGGAaaggCCCGGCGucGCGGCa -3'
miRNA:   3'- -GAGCaaCGUCCUa---GGGCUGC--CGCUGc -5'
9759 5' -56.9 NC_002577.1 + 83828 0.66 0.886265
Target:  5'- aUCGUaaaUGCGuGGAccacugcauUCCCGGacauCGGCGAUGa -3'
miRNA:   3'- gAGCA---ACGU-CCU---------AGGGCU----GCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 3941 0.67 0.878743
Target:  5'- gCUCGUUGCcaguGGAUaggcucgCCCuuuuuuguaacaGAUGGCGAUGg -3'
miRNA:   3'- -GAGCAACGu---CCUA-------GGG------------CUGCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 129673 0.67 0.878743
Target:  5'- gCUCGUUGCcaguGGAUaggcucgCCCuuuuuuguaacaGAUGGCGAUGg -3'
miRNA:   3'- -GAGCAACGu---CCUA-------GGG------------CUGCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 158561 0.67 0.865155
Target:  5'- aUCGgcGUAGcg-CCgCGGCGGUGACGg -3'
miRNA:   3'- gAGCaaCGUCcuaGG-GCUGCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 138776 0.67 0.865155
Target:  5'- aUCGgcGUAGcg-CCgCGGCGGUGACGg -3'
miRNA:   3'- gAGCaaCGUCcuaGG-GCUGCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 48703 0.69 0.764467
Target:  5'- aCUUGUggggccccggGCAGGuggaucacgcaGUCCCG-CGGCGACu -3'
miRNA:   3'- -GAGCAa---------CGUCC-----------UAGGGCuGCCGCUGc -5'
9759 5' -56.9 NC_002577.1 + 132240 0.69 0.754217
Target:  5'- -cCGcgUGCGcGAugaagccgccgucUCCCGGCGGCGACGc -3'
miRNA:   3'- gaGCa-ACGUcCU-------------AGGGCUGCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 1374 0.69 0.754217
Target:  5'- -cCGcgUGCGcGAugaagccgccgucUCCCGGCGGCGACGc -3'
miRNA:   3'- gaGCa-ACGUcCU-------------AGGGCUGCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 139334 0.74 0.500429
Target:  5'- cCUCGUccaaGGGAguacccgcgCCCGGCGGCGGCGc -3'
miRNA:   3'- -GAGCAacg-UCCUa--------GGGCUGCCGCUGC- -5'
9759 5' -56.9 NC_002577.1 + 158004 0.74 0.500429
Target:  5'- cCUCGUccaaGGGAguacccgcgCCCGGCGGCGGCGc -3'
miRNA:   3'- -GAGCAacg-UCCUa--------GGGCUGCCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.