Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9760 | 3' | -54.9 | NC_002577.1 | + | 13091 | 0.66 | 0.958192 |
Target: 5'- -aCUACUUUCUCCGuuuaaacuGCUCCCc-- -3' miRNA: 3'- ggGAUGGAAGAGGCuuu-----CGAGGGccc -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 10317 | 0.66 | 0.95047 |
Target: 5'- uCCCUACag-CUCgGGAccGCUCCCGa- -3' miRNA: 3'- -GGGAUGgaaGAGgCUUu-CGAGGGCcc -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 123297 | 0.66 | 0.95047 |
Target: 5'- uCCCUACag-CUCgGGAccGCUCCCGa- -3' miRNA: 3'- -GGGAUGgaaGAGgCUUu-CGAGGGCcc -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 73764 | 0.67 | 0.946274 |
Target: 5'- aCCCauCCUUCcgaCgCGGAuGCUCCCGGa -3' miRNA: 3'- -GGGauGGAAGa--G-GCUUuCGAGGGCCc -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 29397 | 0.67 | 0.946274 |
Target: 5'- ---aACUggCUCCGAacGAGCUCCCGa- -3' miRNA: 3'- gggaUGGaaGAGGCU--UUCGAGGGCcc -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 3576 | 0.67 | 0.94185 |
Target: 5'- gUCCU-CCUUCggaCGAGuGCUUgCCGGGg -3' miRNA: 3'- -GGGAuGGAAGag-GCUUuCGAG-GGCCC- -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 130038 | 0.67 | 0.94185 |
Target: 5'- gUCCU-CCUUCggaCGAGuGCUUgCCGGGg -3' miRNA: 3'- -GGGAuGGAAGag-GCUUuCGAG-GGCCC- -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 161007 | 0.69 | 0.870848 |
Target: 5'- cCUCUGCCUaC-CgGAGAGCgccgCCUGGGc -3' miRNA: 3'- -GGGAUGGAaGaGgCUUUCGa---GGGCCC- -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 250 | 0.69 | 0.863493 |
Target: 5'- uUCUGCCUguagCCGAcAGUUCgCGGGg -3' miRNA: 3'- gGGAUGGAaga-GGCUuUCGAGgGCCC- -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 133364 | 0.69 | 0.863493 |
Target: 5'- uUCUGCCUguagCCGAcAGUUCgCGGGg -3' miRNA: 3'- gGGAUGGAaga-GGCUuUCGAGgGCCC- -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 16364 | 0.71 | 0.797894 |
Target: 5'- gCCCgGCCUUgUCCGGAGGgUCCaGGu -3' miRNA: 3'- -GGGaUGGAAgAGGCUUUCgAGGgCCc -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 141886 | 0.71 | 0.761357 |
Target: 5'- uUCCUACCgccCUCgGgAGAGUgcucgCCCGGGg -3' miRNA: 3'- -GGGAUGGaa-GAGgC-UUUCGa----GGGCCC- -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 155451 | 0.71 | 0.761357 |
Target: 5'- uUCCUACCgccCUCgGgAGAGUgcucgCCCGGGg -3' miRNA: 3'- -GGGAUGGaa-GAGgC-UUUCGa----GGGCCC- -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 162819 | 1.13 | 0.002602 |
Target: 5'- gCCCUACCUUCUCCGAAAGCUCCCGGGg -3' miRNA: 3'- -GGGAUGGAAGAGGCUUUCGAGGGCCC- -5' |
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9760 | 3' | -54.9 | NC_002577.1 | + | 134509 | 1.13 | 0.002602 |
Target: 5'- gCCCUACCUUCUCCGAAAGCUCCCGGGg -3' miRNA: 3'- -GGGAUGGAAGAGGCUUUCGAGGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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