miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9760 5' -60.7 NC_002577.1 + 11977 0.66 0.769536
Target:  5'- cGCCCGGG--UCGucGCC-CGGGuCGUn -3'
miRNA:   3'- aCGGGCCCuuGGCuuUGGcGCCC-GCG- -5'
9760 5' -60.7 NC_002577.1 + 121637 0.66 0.769536
Target:  5'- cGCCCGGG--UCGucGCC-CGGGuCGUn -3'
miRNA:   3'- aCGGGCCCuuGGCuuUGGcGCCC-GCG- -5'
9760 5' -60.7 NC_002577.1 + 12061 0.66 0.751321
Target:  5'- cGCCCGGGucgucgcCCGGGucgucGCC-CGGGuCGUn -3'
miRNA:   3'- aCGGGCCCuu-----GGCUU-----UGGcGCCC-GCG- -5'
9760 5' -60.7 NC_002577.1 + 125278 0.66 0.751321
Target:  5'- gGCCUucGGAcGCUuaGAGAgCGCGGGCGUu -3'
miRNA:   3'- aCGGGc-CCU-UGG--CUUUgGCGCCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 72185 0.66 0.751321
Target:  5'- gGUCCGGGuggUCGAacaauGACCGUGGauuggucuGCGCu -3'
miRNA:   3'- aCGGGCCCuu-GGCU-----UUGGCGCC--------CGCG- -5'
9760 5' -60.7 NC_002577.1 + 136969 0.66 0.751321
Target:  5'- gGCCCucGGAcguuCCGGAagagGCCGCGucGGCGUc -3'
miRNA:   3'- aCGGGc-CCUu---GGCUU----UGGCGC--CCGCG- -5'
9760 5' -60.7 NC_002577.1 + 11374 0.66 0.751321
Target:  5'- aGCCCcgucGGGAGcgaucCCGGAucggacGCCGCGGcgaacGCGUa -3'
miRNA:   3'- aCGGG----CCCUU-----GGCUU------UGGCGCC-----CGCG- -5'
9760 5' -60.7 NC_002577.1 + 8336 0.66 0.751321
Target:  5'- gGCCUucGGAcGCUuaGAGAgCGCGGGCGUu -3'
miRNA:   3'- aCGGGc-CCU-UGG--CUUUgGCGCCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 160368 0.66 0.751321
Target:  5'- gGCCCucGGAcguuCCGGAagagGCCGCGucGGCGUc -3'
miRNA:   3'- aCGGGc-CCUu---GGCUU----UGGCGC--CCGCG- -5'
9760 5' -60.7 NC_002577.1 + 122240 0.66 0.751321
Target:  5'- aGCCCcgucGGGAGcgaucCCGGAucggacGCCGCGGcgaacGCGUa -3'
miRNA:   3'- aCGGG----CCCUU-----GGCUU------UGGCGCC-----CGCG- -5'
9760 5' -60.7 NC_002577.1 + 158187 0.66 0.7504
Target:  5'- gGCgCUGcGGAAcggaaauCCGGAACCcgGCGGGaCGCc -3'
miRNA:   3'- aCG-GGC-CCUU-------GGCUUUGG--CGCCC-GCG- -5'
9760 5' -60.7 NC_002577.1 + 139151 0.66 0.7504
Target:  5'- gGCgCUGcGGAAcggaaauCCGGAACCcgGCGGGaCGCc -3'
miRNA:   3'- aCG-GGC-CCUU-------GGCUUUGG--CGCCC-GCG- -5'
9760 5' -60.7 NC_002577.1 + 157788 0.66 0.742066
Target:  5'- gUGCuuuCCGGcGuGCgCGccGCCGcCGGGCGCg -3'
miRNA:   3'- -ACG---GGCC-CuUG-GCuuUGGC-GCCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 132047 0.66 0.742066
Target:  5'- gUGCCgCGGauugaGggUCGggGCCGgcgaGGGUGUc -3'
miRNA:   3'- -ACGG-GCC-----CuuGGCuuUGGCg---CCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 139825 0.66 0.742066
Target:  5'- gGCaCGGGAAgaccggcucCUGggGCaGCGGGCGa -3'
miRNA:   3'- aCGgGCCCUU---------GGCuuUGgCGCCCGCg -5'
9760 5' -60.7 NC_002577.1 + 157512 0.66 0.742066
Target:  5'- gGCaCGGGAAgaccggcucCUGggGCaGCGGGCGa -3'
miRNA:   3'- aCGgGCCCUU---------GGCuuUGgCGCCCGCg -5'
9760 5' -60.7 NC_002577.1 + 138277 0.66 0.742066
Target:  5'- cGCCCGccGGCCGcgGCCGCGccguccuccgcGGcCGCg -3'
miRNA:   3'- aCGGGCccUUGGCuuUGGCGC-----------CC-GCG- -5'
9760 5' -60.7 NC_002577.1 + 139549 0.66 0.742066
Target:  5'- gUGCuuuCCGGcGuGCgCGccGCCGcCGGGCGCg -3'
miRNA:   3'- -ACG---GGCC-CuUG-GCuuUGGC-GCCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 1567 0.66 0.742066
Target:  5'- gUGCCgCGGauugaGggUCGggGCCGgcgaGGGUGUc -3'
miRNA:   3'- -ACGG-GCC-----CuuGGCuuUGGCg---CCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 159061 0.66 0.742066
Target:  5'- cGCCCGccGGCCGcgGCCGCGccguccuccgcGGcCGCg -3'
miRNA:   3'- aCGGGCccUUGGCuuUGGCGC-----------CC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.