miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9760 5' -60.7 NC_002577.1 + 155589 0.66 0.732722
Target:  5'- aGgCCGGcacuGCCGGAGCCGUGGcUGUg -3'
miRNA:   3'- aCgGGCCcu--UGGCUUUGGCGCCcGCG- -5'
9760 5' -60.7 NC_002577.1 + 161109 0.66 0.732722
Target:  5'- -cCCCGGGGGgCG-AGCC--GGGCGCc -3'
miRNA:   3'- acGGGCCCUUgGCuUUGGcgCCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 141749 0.66 0.732722
Target:  5'- aGgCCGGcacuGCCGGAGCCGUGGcUGUg -3'
miRNA:   3'- aCgGGCCcu--UGGCUUUGGCGCCcGCG- -5'
9760 5' -60.7 NC_002577.1 + 9038 0.66 0.732722
Target:  5'- cGUaCCGc--GCCGAGGcCCGCGGuGCGCg -3'
miRNA:   3'- aCG-GGCccuUGGCUUU-GGCGCC-CGCG- -5'
9760 5' -60.7 NC_002577.1 + 124576 0.66 0.732722
Target:  5'- cGUaCCGc--GCCGAGGcCCGCGGuGCGCg -3'
miRNA:   3'- aCG-GGCccuUGGCUUU-GGCGCC-CGCG- -5'
9760 5' -60.7 NC_002577.1 + 136229 0.66 0.732722
Target:  5'- -cCCCGGGGGgCG-AGCC--GGGCGCc -3'
miRNA:   3'- acGGGCCCUUgGCuUUGGcgCCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 57654 0.66 0.723299
Target:  5'- gGCCaa-GAAgaaCGAGGCCggcGCGGGCGCa -3'
miRNA:   3'- aCGGgccCUUg--GCUUUGG---CGCCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 130260 0.66 0.723299
Target:  5'- cGCCgCGGGA--CGAAGCCGCcccGGuaaaguccagacGCGCg -3'
miRNA:   3'- aCGG-GCCCUugGCUUUGGCG---CC------------CGCG- -5'
9760 5' -60.7 NC_002577.1 + 3354 0.66 0.723299
Target:  5'- cGCCgCGGGA--CGAAGCCGCcccGGuaaaguccagacGCGCg -3'
miRNA:   3'- aCGG-GCCCUugGCUUUGGCG---CC------------CGCG- -5'
9760 5' -60.7 NC_002577.1 + 81279 0.66 0.723299
Target:  5'- -aUCCGac-GCUGAGgugGCCGCGGGCGUg -3'
miRNA:   3'- acGGGCccuUGGCUU---UGGCGCCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 11792 0.67 0.713804
Target:  5'- cGaCCCGGGcgacGACCcGGGCgacgaCGCGGGCGa -3'
miRNA:   3'- aC-GGGCCC----UUGGcUUUG-----GCGCCCGCg -5'
9760 5' -60.7 NC_002577.1 + 69313 0.67 0.713804
Target:  5'- gGCUCGcGAaauuucauucuGCCGAAuaaGCCGCaGGUGCg -3'
miRNA:   3'- aCGGGCcCU-----------UGGCUU---UGGCGcCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 128993 0.67 0.713804
Target:  5'- gGCCgCGGGuacgcgcGCCGAGuauggGgGGGCGCg -3'
miRNA:   3'- aCGG-GCCCu------UGGCUUugg--CgCCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 141911 0.67 0.704245
Target:  5'- cGCCCGGGGGCUaGAACCcgaaGCGGacCGg -3'
miRNA:   3'- aCGGGCCCUUGGcUUUGG----CGCCc-GCg -5'
9760 5' -60.7 NC_002577.1 + 137462 0.67 0.704245
Target:  5'- cUGCUCGGGucguggcuCCGAGACCuGCuugaucucaGGaGCGCc -3'
miRNA:   3'- -ACGGGCCCuu------GGCUUUGG-CG---------CC-CGCG- -5'
9760 5' -60.7 NC_002577.1 + 117362 0.67 0.704245
Target:  5'- cGCCauuGGacacuguaGAACUGAGgaucugccACCGCuGGGCGCa -3'
miRNA:   3'- aCGGg--CC--------CUUGGCUU--------UGGCG-CCCGCG- -5'
9760 5' -60.7 NC_002577.1 + 155426 0.67 0.704245
Target:  5'- cGCCCGGGGGCUaGAACCcgaaGCGGacCGg -3'
miRNA:   3'- aCGGGCCCUUGGcUUUGG----CGCCc-GCg -5'
9760 5' -60.7 NC_002577.1 + 159875 0.67 0.704245
Target:  5'- cUGCUCGGGucguggcuCCGAGACCuGCuugaucucaGGaGCGCc -3'
miRNA:   3'- -ACGGGCCCuu------GGCUUUGG-CG---------CC-CGCG- -5'
9760 5' -60.7 NC_002577.1 + 12025 0.67 0.694631
Target:  5'- cGCCCGGG--UCGgcGCC-CGGGuCGUc -3'
miRNA:   3'- aCGGGCCCuuGGCuuUGGcGCCC-GCG- -5'
9760 5' -60.7 NC_002577.1 + 157744 0.67 0.684969
Target:  5'- gGUCuCGGGAGCCGuguuACCGCuucccagauGCGCg -3'
miRNA:   3'- aCGG-GCCCUUGGCuu--UGGCGcc-------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.