miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9761 3' -55.5 NC_002577.1 + 72081 0.66 0.937535
Target:  5'- aUACGACGCagaUCUgUaGGGCGUAGCGGa -3'
miRNA:   3'- cGUGUUGUG---AGGgAgCCUGCGUCGUC- -5'
9761 3' -55.5 NC_002577.1 + 91 0.66 0.932603
Target:  5'- cGCGCAGCAUUgCg-CGGACaCAGUGGg -3'
miRNA:   3'- -CGUGUUGUGAgGgaGCCUGcGUCGUC- -5'
9761 3' -55.5 NC_002577.1 + 133522 0.66 0.932603
Target:  5'- cGCGCAGCAUUgCg-CGGACaCAGUGGg -3'
miRNA:   3'- -CGUGUUGUGAgGgaGCCUGcGUCGUC- -5'
9761 3' -55.5 NC_002577.1 + 23475 0.66 0.927433
Target:  5'- aGCAgGACGuggUUUUCUCGGcCGCGGCGa -3'
miRNA:   3'- -CGUgUUGU---GAGGGAGCCuGCGUCGUc -5'
9761 3' -55.5 NC_002577.1 + 60706 0.66 0.921471
Target:  5'- aGUAUAGCAauuccuuCUCCCcauUCGGugGCcuuuAGCGGu -3'
miRNA:   3'- -CGUGUUGU-------GAGGG---AGCCugCG----UCGUC- -5'
9761 3' -55.5 NC_002577.1 + 158138 0.66 0.916378
Target:  5'- cCACcGCGCUCCCUCccGCGCuuuccGCGGc -3'
miRNA:   3'- cGUGuUGUGAGGGAGccUGCGu----CGUC- -5'
9761 3' -55.5 NC_002577.1 + 30540 0.66 0.916378
Target:  5'- aGUACAuuGCGCgCUCUCGaggacaGugGCGGCGGa -3'
miRNA:   3'- -CGUGU--UGUGaGGGAGC------CugCGUCGUC- -5'
9761 3' -55.5 NC_002577.1 + 61258 0.66 0.916378
Target:  5'- aGUACAugGCUCCCgCGGcUGCGaucagauacguGCGGa -3'
miRNA:   3'- -CGUGUugUGAGGGaGCCuGCGU-----------CGUC- -5'
9761 3' -55.5 NC_002577.1 + 139200 0.66 0.916378
Target:  5'- cCACcGCGCUCCCUCccGCGCuuuccGCGGc -3'
miRNA:   3'- cGUGuUGUGAGGGAGccUGCGu----CGUC- -5'
9761 3' -55.5 NC_002577.1 + 138150 0.67 0.910494
Target:  5'- gGCGCAcCACggcaagCUCUCGcccaccGACGCAGCGc -3'
miRNA:   3'- -CGUGUuGUGa-----GGGAGC------CUGCGUCGUc -5'
9761 3' -55.5 NC_002577.1 + 159188 0.67 0.910494
Target:  5'- gGCGCAcCACggcaagCUCUCGcccaccGACGCAGCGc -3'
miRNA:   3'- -CGUGUuGUGa-----GGGAGC------CUGCGUCGUc -5'
9761 3' -55.5 NC_002577.1 + 124293 0.67 0.909893
Target:  5'- -uGCGACGCUaggcuggCCCggggcgCGGACGCGGUc- -3'
miRNA:   3'- cgUGUUGUGA-------GGGa-----GCCUGCGUCGuc -5'
9761 3' -55.5 NC_002577.1 + 9321 0.67 0.909893
Target:  5'- -uGCGACGCUaggcuggCCCggggcgCGGACGCGGUc- -3'
miRNA:   3'- cgUGUUGUGA-------GGGa-----GCCUGCGUCGuc -5'
9761 3' -55.5 NC_002577.1 + 11869 0.67 0.90375
Target:  5'- cGCGCucCGCaUCCCUCucggcguccggagGGGCGC-GCGGa -3'
miRNA:   3'- -CGUGuuGUG-AGGGAG-------------CCUGCGuCGUC- -5'
9761 3' -55.5 NC_002577.1 + 11305 0.67 0.898022
Target:  5'- aGCGCcgguccGGCGCuUCCCgcgaaCGGACGCAagguggcgGCAGa -3'
miRNA:   3'- -CGUG------UUGUG-AGGGa----GCCUGCGU--------CGUC- -5'
9761 3' -55.5 NC_002577.1 + 141207 0.67 0.898022
Target:  5'- aGCACAcguccugguACGgauCUCCCggGGugGCGGguGg -3'
miRNA:   3'- -CGUGU---------UGU---GAGGGagCCugCGUCguC- -5'
9761 3' -55.5 NC_002577.1 + 156131 0.67 0.898021
Target:  5'- aGCACAcguccugguACGgauCUCCCggGGugGCGGguGg -3'
miRNA:   3'- -CGUGU---------UGU---GAGGGagCCugCGUCguC- -5'
9761 3' -55.5 NC_002577.1 + 122309 0.67 0.898021
Target:  5'- aGCGCcgguccGGCGCuUCCCgcgaaCGGACGCAagguggcgGCAGa -3'
miRNA:   3'- -CGUG------UUGUG-AGGGa----GCCUGCGU--------CGUC- -5'
9761 3' -55.5 NC_002577.1 + 76379 0.67 0.898021
Target:  5'- cGCAUuuGCGC-CCC-CGGACGUuauauuAGCGGa -3'
miRNA:   3'- -CGUGu-UGUGaGGGaGCCUGCG------UCGUC- -5'
9761 3' -55.5 NC_002577.1 + 36476 0.67 0.891438
Target:  5'- aGCACGAauaacCGCUCCCUCGuACGauaAGCc- -3'
miRNA:   3'- -CGUGUU-----GUGAGGGAGCcUGCg--UCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.