miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9761 5' -57.3 NC_002577.1 + 137602 0.68 0.741709
Target:  5'- ---cGCUGGaGUGCGAGGGGGUcguggcggcGCUUc -3'
miRNA:   3'- aagaCGACUgCACGCUCCCUCA---------CGAG- -5'
9761 5' -57.3 NC_002577.1 + 159735 0.68 0.741709
Target:  5'- ---cGCUGGaGUGCGAGGGGGUcguggcggcGCUUc -3'
miRNA:   3'- aagaCGACUgCACGCUCCCUCA---------CGAG- -5'
9761 5' -57.3 NC_002577.1 + 9103 0.69 0.661131
Target:  5'- ---gGCggGAUGUGCGAGGGGGgggGCg- -3'
miRNA:   3'- aagaCGa-CUGCACGCUCCCUCa--CGag -5'
9761 5' -57.3 NC_002577.1 + 124511 0.69 0.661131
Target:  5'- ---gGCggGAUGUGCGAGGGGGgggGCg- -3'
miRNA:   3'- aagaCGa-CUGCACGCUCCCUCa--CGag -5'
9761 5' -57.3 NC_002577.1 + 136566 0.75 0.365228
Target:  5'- -aCUGCUG-CGUcCGAGGGAGUGUUg -3'
miRNA:   3'- aaGACGACuGCAcGCUCCCUCACGAg -5'
9761 5' -57.3 NC_002577.1 + 160771 0.75 0.365228
Target:  5'- -aCUGCUG-CGUcCGAGGGAGUGUUg -3'
miRNA:   3'- aaGACGACuGCAcGCUCCCUCACGAg -5'
9761 5' -57.3 NC_002577.1 + 160927 1.07 0.002356
Target:  5'- cUUCUGCUGACGUGCGAGGGAGUGCUCg -3'
miRNA:   3'- -AAGACGACUGCACGCUCCCUCACGAG- -5'
9761 5' -57.3 NC_002577.1 + 136411 1.07 0.002356
Target:  5'- cUUCUGCUGACGUGCGAGGGAGUGCUCg -3'
miRNA:   3'- -AAGACGACUGCACGCUCCCUCACGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.