Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9761 | 5' | -57.3 | NC_002577.1 | + | 137602 | 0.68 | 0.741709 |
Target: 5'- ---cGCUGGaGUGCGAGGGGGUcguggcggcGCUUc -3' miRNA: 3'- aagaCGACUgCACGCUCCCUCA---------CGAG- -5' |
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9761 | 5' | -57.3 | NC_002577.1 | + | 159735 | 0.68 | 0.741709 |
Target: 5'- ---cGCUGGaGUGCGAGGGGGUcguggcggcGCUUc -3' miRNA: 3'- aagaCGACUgCACGCUCCCUCA---------CGAG- -5' |
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9761 | 5' | -57.3 | NC_002577.1 | + | 9103 | 0.69 | 0.661131 |
Target: 5'- ---gGCggGAUGUGCGAGGGGGgggGCg- -3' miRNA: 3'- aagaCGa-CUGCACGCUCCCUCa--CGag -5' |
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9761 | 5' | -57.3 | NC_002577.1 | + | 124511 | 0.69 | 0.661131 |
Target: 5'- ---gGCggGAUGUGCGAGGGGGgggGCg- -3' miRNA: 3'- aagaCGa-CUGCACGCUCCCUCa--CGag -5' |
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9761 | 5' | -57.3 | NC_002577.1 | + | 136566 | 0.75 | 0.365228 |
Target: 5'- -aCUGCUG-CGUcCGAGGGAGUGUUg -3' miRNA: 3'- aaGACGACuGCAcGCUCCCUCACGAg -5' |
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9761 | 5' | -57.3 | NC_002577.1 | + | 160771 | 0.75 | 0.365228 |
Target: 5'- -aCUGCUG-CGUcCGAGGGAGUGUUg -3' miRNA: 3'- aaGACGACuGCAcGCUCCCUCACGAg -5' |
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9761 | 5' | -57.3 | NC_002577.1 | + | 160927 | 1.07 | 0.002356 |
Target: 5'- cUUCUGCUGACGUGCGAGGGAGUGCUCg -3' miRNA: 3'- -AAGACGACUGCACGCUCCCUCACGAG- -5' |
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9761 | 5' | -57.3 | NC_002577.1 | + | 136411 | 1.07 | 0.002356 |
Target: 5'- cUUCUGCUGACGUGCGAGGGAGUGCUCg -3' miRNA: 3'- -AAGACGACUGCACGCUCCCUCACGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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