Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9762 | 3' | -57.1 | NC_002577.1 | + | 11601 | 0.67 | 0.837097 |
Target: 5'- cGGAACGCGau-GCGGCgggggaaaaGGCGCCGa- -3' miRNA: 3'- -UCUUGCGCgguUGCCGa--------CUGCGGUgu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 158591 | 0.67 | 0.828851 |
Target: 5'- ---uCGCGCCgGACGGCUGACGg---- -3' miRNA: 3'- ucuuGCGCGG-UUGCCGACUGCggugu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 9171 | 0.67 | 0.811839 |
Target: 5'- cGAugGCGCgGGCGGggGAgucCGUCGCGu -3' miRNA: 3'- uCUugCGCGgUUGCCgaCU---GCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 124443 | 0.67 | 0.811839 |
Target: 5'- cGAugGCGCgGGCGGggGAgucCGUCGCGu -3' miRNA: 3'- uCUugCGCGgUUGCCgaCU---GCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 64122 | 0.67 | 0.837096 |
Target: 5'- aGGGAUGCGagGGCGGUUGGagugucgaugcUGCCGCGa -3' miRNA: 3'- -UCUUGCGCggUUGCCGACU-----------GCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 91547 | 0.67 | 0.837096 |
Target: 5'- gAGAAUaaagGgGCUAcCGGUgGACGCCGCAc -3' miRNA: 3'- -UCUUG----CgCGGUuGCCGaCUGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 122013 | 0.67 | 0.837096 |
Target: 5'- cGGAACGCGau-GCGGCgggggaaaaGGCGCCGa- -3' miRNA: 3'- -UCUUGCGCgguUGCCGa--------CUGCGGUgu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 62488 | 0.67 | 0.803088 |
Target: 5'- --uGCGCGuCCAggACGGCgGuuGCCGCAu -3' miRNA: 3'- ucuUGCGC-GGU--UGCCGaCugCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 141548 | 0.68 | 0.794185 |
Target: 5'- aGGAGCGgauCGCCAGugcugcCGGCgu-CGCCACGg -3' miRNA: 3'- -UCUUGC---GCGGUU------GCCGacuGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 135184 | 0.68 | 0.788774 |
Target: 5'- cGGAUGCGUCAccgccugguccauugGuCGGCcGugGCCACGc -3' miRNA: 3'- uCUUGCGCGGU---------------U-GCCGaCugCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 162144 | 0.68 | 0.788775 |
Target: 5'- cGGAUGCGUCAccgccugguccauugGuCGGCcGugGCCACGc -3' miRNA: 3'- uCUUGCGCGGU---------------U-GCCGaCugCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 19825 | 0.68 | 0.775957 |
Target: 5'- gAGAGCgGCGCgGcAUGGUauucGGCGCCGCAc -3' miRNA: 3'- -UCUUG-CGCGgU-UGCCGa---CUGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 155789 | 0.68 | 0.794186 |
Target: 5'- aGGAGCGgauCGCCAGugcugcCGGCgu-CGCCACGg -3' miRNA: 3'- -UCUUGC---GCGGUU------GCCGacuGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 55539 | 0.68 | 0.793287 |
Target: 5'- cAGAGCGUucguaacgacgaaGUCAAC-GCUGcCGCCGCAg -3' miRNA: 3'- -UCUUGCG-------------CGGUUGcCGACuGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 122365 | 0.69 | 0.718523 |
Target: 5'- cGGccCGCGCCGGgGGCUagaaACGCCGCc -3' miRNA: 3'- -UCuuGCGCGGUUgCCGAc---UGCGGUGu -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 31311 | 0.69 | 0.6987 |
Target: 5'- uGAugGCGCCuACGGCgauauaacacgUGAUGCaUACAa -3' miRNA: 3'- uCUugCGCGGuUGCCG-----------ACUGCG-GUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 8103 | 0.69 | 0.728329 |
Target: 5'- -aAACGCGCCGcuGCGcGCcuaaACGCCGCAg -3' miRNA: 3'- ucUUGCGCGGU--UGC-CGac--UGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 137211 | 0.69 | 0.708643 |
Target: 5'- gAGAAgGC-CCGACGGCUGcaacGCGUgGCGc -3' miRNA: 3'- -UCUUgCGcGGUUGCCGAC----UGCGgUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 125510 | 0.69 | 0.728329 |
Target: 5'- -aAACGCGCCGcuGCGcGCcuaaACGCCGCAg -3' miRNA: 3'- ucUUGCGCGGU--UGC-CGac--UGCGGUGU- -5' |
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9762 | 3' | -57.1 | NC_002577.1 | + | 138468 | 0.69 | 0.6987 |
Target: 5'- gAGGACgGCGCgGccGCGGCcggcgGGCGCCAUc -3' miRNA: 3'- -UCUUG-CGCGgU--UGCCGa----CUGCGGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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