miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9762 3' -57.1 NC_002577.1 + 64122 0.67 0.837096
Target:  5'- aGGGAUGCGagGGCGGUUGGagugucgaugcUGCCGCGa -3'
miRNA:   3'- -UCUUGCGCggUUGCCGACU-----------GCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 122013 0.67 0.837096
Target:  5'- cGGAACGCGau-GCGGCgggggaaaaGGCGCCGa- -3'
miRNA:   3'- -UCUUGCGCgguUGCCGa--------CUGCGGUgu -5'
9762 3' -57.1 NC_002577.1 + 138746 0.67 0.828851
Target:  5'- ---uCGCGCCgGACGGCUGACGg---- -3'
miRNA:   3'- ucuuGCGCGG-UUGCCGACUGCggugu -5'
9762 3' -57.1 NC_002577.1 + 158591 0.67 0.828851
Target:  5'- ---uCGCGCCgGACGGCUGACGg---- -3'
miRNA:   3'- ucuuGCGCGG-UUGCCGACUGCggugu -5'
9762 3' -57.1 NC_002577.1 + 78862 0.67 0.821279
Target:  5'- aGGGGCGCGUCGGaGGCgucuaaauauguaugGAUGCCugGg -3'
miRNA:   3'- -UCUUGCGCGGUUgCCGa--------------CUGCGGugU- -5'
9762 3' -57.1 NC_002577.1 + 9171 0.67 0.811839
Target:  5'- cGAugGCGCgGGCGGggGAgucCGUCGCGu -3'
miRNA:   3'- uCUugCGCGgUUGCCgaCU---GCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 124443 0.67 0.811839
Target:  5'- cGAugGCGCgGGCGGggGAgucCGUCGCGu -3'
miRNA:   3'- uCUugCGCGgUUGCCgaCU---GCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 62488 0.67 0.803088
Target:  5'- --uGCGCGuCCAggACGGCgGuuGCCGCAu -3'
miRNA:   3'- ucuUGCGC-GGU--UGCCGaCugCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 155789 0.68 0.794186
Target:  5'- aGGAGCGgauCGCCAGugcugcCGGCgu-CGCCACGg -3'
miRNA:   3'- -UCUUGC---GCGGUU------GCCGacuGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 141548 0.68 0.794185
Target:  5'- aGGAGCGgauCGCCAGugcugcCGGCgu-CGCCACGg -3'
miRNA:   3'- -UCUUGC---GCGGUU------GCCGacuGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 55539 0.68 0.793287
Target:  5'- cAGAGCGUucguaacgacgaaGUCAAC-GCUGcCGCCGCAg -3'
miRNA:   3'- -UCUUGCG-------------CGGUUGcCGACuGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 162144 0.68 0.788775
Target:  5'- cGGAUGCGUCAccgccugguccauugGuCGGCcGugGCCACGc -3'
miRNA:   3'- uCUUGCGCGGU---------------U-GCCGaCugCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 135184 0.68 0.788774
Target:  5'- cGGAUGCGUCAccgccugguccauugGuCGGCcGugGCCACGc -3'
miRNA:   3'- uCUUGCGCGGU---------------U-GCCGaCugCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 19825 0.68 0.775957
Target:  5'- gAGAGCgGCGCgGcAUGGUauucGGCGCCGCAc -3'
miRNA:   3'- -UCUUG-CGCGgU-UGCCGa---CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 125510 0.69 0.728329
Target:  5'- -aAACGCGCCGcuGCGcGCcuaaACGCCGCAg -3'
miRNA:   3'- ucUUGCGCGGU--UGC-CGac--UGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 8103 0.69 0.728329
Target:  5'- -aAACGCGCCGcuGCGcGCcuaaACGCCGCAg -3'
miRNA:   3'- ucUUGCGCGGU--UGC-CGac--UGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 4580 0.69 0.718523
Target:  5'- cGGAGCGUGUaacgauuuccgCGGCGcGCgacGACGCCGCGc -3'
miRNA:   3'- -UCUUGCGCG-----------GUUGC-CGa--CUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 154265 0.69 0.718523
Target:  5'- gAGAGCGCGUCucuGCgauguGGCUu-CGCCGCAa -3'
miRNA:   3'- -UCUUGCGCGGu--UG-----CCGAcuGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 122365 0.69 0.718523
Target:  5'- cGGccCGCGCCGGgGGCUagaaACGCCGCc -3'
miRNA:   3'- -UCuuGCGCGGUUgCCGAc---UGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 141329 0.69 0.718523
Target:  5'- gGGAaacGCGCGCCGGuccaaccgUGGC-GACGCCgGCAg -3'
miRNA:   3'- -UCU---UGCGCGGUU--------GCCGaCUGCGG-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.