Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9762 | 5' | -55.3 | NC_002577.1 | + | 101573 | 0.66 | 0.947386 |
Target: 5'- cGCG-GGUUGGUaGGUgacCGUCGACUUa -3' miRNA: 3'- cCGCuUCGACCAgUCGa--GCAGCUGAG- -5' |
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9762 | 5' | -55.3 | NC_002577.1 | + | 125679 | 0.66 | 0.922932 |
Target: 5'- cGGCGuuccGGGC-GGUCGGCgaGUCGGCg- -3' miRNA: 3'- -CCGC----UUCGaCCAGUCGagCAGCUGag -5' |
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9762 | 5' | -55.3 | NC_002577.1 | + | 7935 | 0.66 | 0.922932 |
Target: 5'- cGGCGuuccGGGC-GGUCGGCgaGUCGGCg- -3' miRNA: 3'- -CCGC----UUCGaCCAGUCGagCAGCUGag -5' |
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9762 | 5' | -55.3 | NC_002577.1 | + | 8588 | 0.67 | 0.917329 |
Target: 5'- cGCGAcaCUGGUCGGaaCUCG-CGACUUc -3' miRNA: 3'- cCGCUucGACCAGUC--GAGCaGCUGAG- -5' |
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9762 | 5' | -55.3 | NC_002577.1 | + | 125026 | 0.67 | 0.917329 |
Target: 5'- cGCGAcaCUGGUCGGaaCUCG-CGACUUc -3' miRNA: 3'- cCGCUucGACCAGUC--GAGCaGCUGAG- -5' |
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9762 | 5' | -55.3 | NC_002577.1 | + | 65579 | 0.67 | 0.885794 |
Target: 5'- aGCGAAGCUGGcCAGCUgaugCGaaauUUGACa- -3' miRNA: 3'- cCGCUUCGACCaGUCGA----GC----AGCUGag -5' |
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9762 | 5' | -55.3 | NC_002577.1 | + | 124884 | 0.68 | 0.856536 |
Target: 5'- cGCGggGCcGGUgAGCUaa-CGGCUCc -3' miRNA: 3'- cCGCuuCGaCCAgUCGAgcaGCUGAG- -5' |
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9762 | 5' | -55.3 | NC_002577.1 | + | 8730 | 0.68 | 0.856536 |
Target: 5'- cGCGggGCcGGUgAGCUaa-CGGCUCc -3' miRNA: 3'- cCGCuuCGaCCAgUCGAgcaGCUGAG- -5' |
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9762 | 5' | -55.3 | NC_002577.1 | + | 160830 | 1.11 | 0.002923 |
Target: 5'- gGGCGAAGCUGGUCAGCUCGUCGACUCc -3' miRNA: 3'- -CCGCUUCGACCAGUCGAGCAGCUGAG- -5' |
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9762 | 5' | -55.3 | NC_002577.1 | + | 136508 | 1.11 | 0.002923 |
Target: 5'- gGGCGAAGCUGGUCAGCUCGUCGACUCc -3' miRNA: 3'- -CCGCUUCGACCAGUCGAGCAGCUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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