miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9763 3' -53.1 NC_002577.1 + 122668 0.66 0.963264
Target:  5'- cGGUCccgcGCUuucGGaCGGCGGGCCGGc -3'
miRNA:   3'- cCCAGaaa-CGAu--UC-GUUGCCCGGCUa -5'
9763 3' -53.1 NC_002577.1 + 10946 0.66 0.963264
Target:  5'- cGGUCccgcGCUuucGGaCGGCGGGCCGGc -3'
miRNA:   3'- cCCAGaaa-CGAu--UC-GUUGCCCGGCUa -5'
9763 3' -53.1 NC_002577.1 + 134676 0.68 0.922395
Target:  5'- aGGGcggaguUCUgagGCUugagggacaauGAGCGGCGGGUCGGUu -3'
miRNA:   3'- -CCC------AGAaa-CGA-----------UUCGUUGCCCGGCUA- -5'
9763 3' -53.1 NC_002577.1 + 157043 0.68 0.916613
Target:  5'- aGGGgagCgggUGCgAGGCGGgGGGCUGAa -3'
miRNA:   3'- -CCCa--Gaa-ACGaUUCGUUgCCCGGCUa -5'
9763 3' -53.1 NC_002577.1 + 162652 0.68 0.916613
Target:  5'- aGGGcggaguUCUgagGCUugaggacaauGAGCGGCGGGUCGGUu -3'
miRNA:   3'- -CCC------AGAaa-CGA----------UUCGUUGCCCGGCUA- -5'
9763 3' -53.1 NC_002577.1 + 140295 0.68 0.916613
Target:  5'- aGGGgagCgggUGCgAGGCGGgGGGCUGAa -3'
miRNA:   3'- -CCCa--Gaa-ACGaUUCGUUgCCCGGCUa -5'
9763 3' -53.1 NC_002577.1 + 2838 0.7 0.828702
Target:  5'- cGGUCgcccGCUcuGCGAUGGGCUGGUu -3'
miRNA:   3'- cCCAGaaa-CGAuuCGUUGCCCGGCUA- -5'
9763 3' -53.1 NC_002577.1 + 130775 0.7 0.828702
Target:  5'- cGGUCgcccGCUcuGCGAUGGGCUGGUu -3'
miRNA:   3'- cCCAGaaa-CGAuuCGUUGCCCGGCUA- -5'
9763 3' -53.1 NC_002577.1 + 70984 0.71 0.80204
Target:  5'- -cGUCUUUGCggagauacGCAGCGGGgCCGGUc -3'
miRNA:   3'- ccCAGAAACGauu-----CGUUGCCC-GGCUA- -5'
9763 3' -53.1 NC_002577.1 + 131150 0.71 0.80204
Target:  5'- gGGGUCgugGUUAGGCGuuuagggguCGGGUCGAg -3'
miRNA:   3'- -CCCAGaaaCGAUUCGUu--------GCCCGGCUa -5'
9763 3' -53.1 NC_002577.1 + 2464 0.71 0.80204
Target:  5'- gGGGUCgugGUUAGGCGuuuagggguCGGGUCGAg -3'
miRNA:   3'- -CCCAGaaaCGAUUCGUu--------GCCCGGCUa -5'
9763 3' -53.1 NC_002577.1 + 160200 1.07 0.006574
Target:  5'- gGGGUCUUUGCUAAGCAACGGGCCGAUc -3'
miRNA:   3'- -CCCAGAAACGAUUCGUUGCCCGGCUA- -5'
9763 3' -53.1 NC_002577.1 + 137138 1.07 0.006574
Target:  5'- gGGGUCUUUGCUAAGCAACGGGCCGAUc -3'
miRNA:   3'- -CCCAGAAACGAUUCGUUGCCCGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.