miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9764 5' -63.4 NC_002577.1 + 159631 0.66 0.539481
Target:  5'- -cGcuGGCUGCaGACGCCauaGGCGCGu -3'
miRNA:   3'- aaCuuCCGGCG-CUGCGGgg-CCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 10878 0.67 0.520532
Target:  5'- ---cGGGCCGCGACcCUCgCGGCGUcCg -3'
miRNA:   3'- aacuUCCGGCGCUGcGGG-GCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 76177 0.67 0.520532
Target:  5'- -cGAAGGuCCGCuaauauaACGUCCgGGgGCGCa -3'
miRNA:   3'- aaCUUCC-GGCGc------UGCGGGgCCgCGUG- -5'
9764 5' -63.4 NC_002577.1 + 125448 0.67 0.499996
Target:  5'- -cGAAGGCCGUacggacaccgguGCGUCCgGGCGCuCg -3'
miRNA:   3'- aaCUUCCGGCGc-----------UGCGGGgCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 8165 0.67 0.499996
Target:  5'- -cGAAGGCCGUacggacaccgguGCGUCCgGGCGCuCg -3'
miRNA:   3'- aaCUUCCGGCGc-----------UGCGGGgCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 163201 0.67 0.483465
Target:  5'- ----uGGCCGCGcggaGCCgCCGGCGguCg -3'
miRNA:   3'- aacuuCCGGCGCug--CGG-GGCCGCguG- -5'
9764 5' -63.4 NC_002577.1 + 138490 0.67 0.483465
Target:  5'- --aGAGGCCGCGGCcgcgGCCgcggaggaCGGCGCGg -3'
miRNA:   3'- aacUUCCGGCGCUG----CGGg-------GCCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 134127 0.67 0.483465
Target:  5'- ----uGGCCGCGcggaGCCgCCGGCGguCg -3'
miRNA:   3'- aacuuCCGGCGCug--CGG-GGCCGCguG- -5'
9764 5' -63.4 NC_002577.1 + 158847 0.67 0.483465
Target:  5'- --aGAGGCCGCGGCcgcgGCCgcggaggaCGGCGCGg -3'
miRNA:   3'- aacUUCCGGCGCUG----CGGg-------GCCGCGUg -5'
9764 5' -63.4 NC_002577.1 + 76889 0.67 0.474395
Target:  5'- -cGGcaGCCGCGuguaACGCaCCCGGCuGCGCu -3'
miRNA:   3'- aaCUucCGGCGC----UGCG-GGGCCG-CGUG- -5'
9764 5' -63.4 NC_002577.1 + 1043 0.68 0.465412
Target:  5'- -gGggGGCUgGCGGagaccgccucUGUCCCGGCGCuCg -3'
miRNA:   3'- aaCuuCCGG-CGCU----------GCGGGGCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 132570 0.68 0.465412
Target:  5'- -gGggGGCUgGCGGagaccgccucUGUCCCGGCGCuCg -3'
miRNA:   3'- aaCuuCCGG-CGCU----------GCGGGGCCGCGuG- -5'
9764 5' -63.4 NC_002577.1 + 53508 0.68 0.456517
Target:  5'- ----cGGCCGC-ACGUccgacaugUCCGGCGCGCa -3'
miRNA:   3'- aacuuCCGGCGcUGCG--------GGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 161254 0.68 0.455633
Target:  5'- aUGAcgccGGCCGCGgucaGCGCCgaaacguCCGGCGcCGCu -3'
miRNA:   3'- aACUu---CCGGCGC----UGCGG-------GGCCGC-GUG- -5'
9764 5' -63.4 NC_002577.1 + 136084 0.68 0.455633
Target:  5'- aUGAcgccGGCCGCGgucaGCGCCgaaacguCCGGCGcCGCu -3'
miRNA:   3'- aACUu---CCGGCGC----UGCGG-------GGCCGC-GUG- -5'
9764 5' -63.4 NC_002577.1 + 130256 0.68 0.439007
Target:  5'- -gGAAcGCCGCGGgacgaagcCGCCCCGGUaaaguccagacGCGCg -3'
miRNA:   3'- aaCUUcCGGCGCU--------GCGGGGCCG-----------CGUG- -5'
9764 5' -63.4 NC_002577.1 + 3358 0.68 0.439007
Target:  5'- -gGAAcGCCGCGGgacgaagcCGCCCCGGUaaaguccagacGCGCg -3'
miRNA:   3'- aaCUUcCGGCGCU--------GCGGGGCCG-----------CGUG- -5'
9764 5' -63.4 NC_002577.1 + 10120 0.68 0.421043
Target:  5'- gUGGAGgggugugggaaacGCCGCGACGCCgCGGCcCGu -3'
miRNA:   3'- aACUUC-------------CGGCGCUGCGGgGCCGcGUg -5'
9764 5' -63.4 NC_002577.1 + 123494 0.68 0.421043
Target:  5'- gUGGAGgggugugggaaacGCCGCGACGCCgCGGCcCGu -3'
miRNA:   3'- aACUUC-------------CGGCGCUGCGGgGCCGcGUg -5'
9764 5' -63.4 NC_002577.1 + 137210 0.69 0.405177
Target:  5'- -aGAAGGCC-CGACGgCUgcaacgcgUGGCGCGCc -3'
miRNA:   3'- aaCUUCCGGcGCUGCgGG--------GCCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.