miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9765 3' -56.8 NC_002577.1 + 160036 0.66 0.894786
Target:  5'- cGCUCgGCcUUGGcGAUGCCCUGGGu -3'
miRNA:   3'- aCGAGaUGaAGUCcCUACGGGGCCUc -5'
9765 3' -56.8 NC_002577.1 + 137302 0.66 0.894786
Target:  5'- cGCUCgGCcUUGGcGAUGCCCUGGGu -3'
miRNA:   3'- aCGAGaUGaAGUCcCUACGGGGCCUc -5'
9765 3' -56.8 NC_002577.1 + 48714 0.66 0.888103
Target:  5'- gUGCgUCUguaACUUguGGG--GCCCCGGGc -3'
miRNA:   3'- -ACG-AGA---UGAAguCCCuaCGGGGCCUc -5'
9765 3' -56.8 NC_002577.1 + 45556 0.66 0.874071
Target:  5'- gUGCUCUGC----GGGucGCCCCGGuGg -3'
miRNA:   3'- -ACGAGAUGaaguCCCuaCGGGGCCuC- -5'
9765 3' -56.8 NC_002577.1 + 78494 0.67 0.83533
Target:  5'- uUGUcg-GCggCAGGGGcgacuUGCCCCGGAa -3'
miRNA:   3'- -ACGagaUGaaGUCCCU-----ACGGGGCCUc -5'
9765 3' -56.8 NC_002577.1 + 104343 0.68 0.792018
Target:  5'- -uCUCUGCcUCGGGagaGAUGCCCUgaGGAGu -3'
miRNA:   3'- acGAGAUGaAGUCC---CUACGGGG--CCUC- -5'
9765 3' -56.8 NC_002577.1 + 14581 0.69 0.754746
Target:  5'- gGC-CUAUUUCAuGGGGgaccgGCUCCGGAu -3'
miRNA:   3'- aCGaGAUGAAGU-CCCUa----CGGGGCCUc -5'
9765 3' -56.8 NC_002577.1 + 2105 0.69 0.745137
Target:  5'- -uCUCUGggUCAGGGuuaagGCCUCGGGGu -3'
miRNA:   3'- acGAGAUgaAGUCCCua---CGGGGCCUC- -5'
9765 3' -56.8 NC_002577.1 + 131509 0.69 0.745137
Target:  5'- -uCUCUGggUCAGGGuuaagGCCUCGGGGu -3'
miRNA:   3'- acGAGAUgaAGUCCCua---CGGGGCCUC- -5'
9765 3' -56.8 NC_002577.1 + 102695 0.7 0.655319
Target:  5'- cGUcgUCUACcUCgcguuaGGGGAUGCCUCGGAa -3'
miRNA:   3'- aCG--AGAUGaAG------UCCCUACGGGGCCUc -5'
9765 3' -56.8 NC_002577.1 + 159217 1.08 0.002978
Target:  5'- cUGCUCUACUUCAGGGAUGCCCCGGAGc -3'
miRNA:   3'- -ACGAGAUGAAGUCCCUACGGGGCCUC- -5'
9765 3' -56.8 NC_002577.1 + 138121 1.08 0.002978
Target:  5'- cUGCUCUACUUCAGGGAUGCCCCGGAGc -3'
miRNA:   3'- -ACGAGAUGAAGUCCCUACGGGGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.