Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9765 | 3' | -56.8 | NC_002577.1 | + | 138121 | 1.08 | 0.002978 |
Target: 5'- cUGCUCUACUUCAGGGAUGCCCCGGAGc -3' miRNA: 3'- -ACGAGAUGAAGUCCCUACGGGGCCUC- -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 159217 | 1.08 | 0.002978 |
Target: 5'- cUGCUCUACUUCAGGGAUGCCCCGGAGc -3' miRNA: 3'- -ACGAGAUGAAGUCCCUACGGGGCCUC- -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 102695 | 0.7 | 0.655319 |
Target: 5'- cGUcgUCUACcUCgcguuaGGGGAUGCCUCGGAa -3' miRNA: 3'- aCG--AGAUGaAG------UCCCUACGGGGCCUc -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 131509 | 0.69 | 0.745137 |
Target: 5'- -uCUCUGggUCAGGGuuaagGCCUCGGGGu -3' miRNA: 3'- acGAGAUgaAGUCCCua---CGGGGCCUC- -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 14581 | 0.69 | 0.754746 |
Target: 5'- gGC-CUAUUUCAuGGGGgaccgGCUCCGGAu -3' miRNA: 3'- aCGaGAUGAAGU-CCCUa----CGGGGCCUc -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 2105 | 0.69 | 0.745137 |
Target: 5'- -uCUCUGggUCAGGGuuaagGCCUCGGGGu -3' miRNA: 3'- acGAGAUgaAGUCCCua---CGGGGCCUC- -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 104343 | 0.68 | 0.792018 |
Target: 5'- -uCUCUGCcUCGGGagaGAUGCCCUgaGGAGu -3' miRNA: 3'- acGAGAUGaAGUCC---CUACGGGG--CCUC- -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 78494 | 0.67 | 0.83533 |
Target: 5'- uUGUcg-GCggCAGGGGcgacuUGCCCCGGAa -3' miRNA: 3'- -ACGagaUGaaGUCCCU-----ACGGGGCCUc -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 48714 | 0.66 | 0.888103 |
Target: 5'- gUGCgUCUguaACUUguGGG--GCCCCGGGc -3' miRNA: 3'- -ACG-AGA---UGAAguCCCuaCGGGGCCUc -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 45556 | 0.66 | 0.874071 |
Target: 5'- gUGCUCUGC----GGGucGCCCCGGuGg -3' miRNA: 3'- -ACGAGAUGaaguCCCuaCGGGGCCuC- -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 137302 | 0.66 | 0.894786 |
Target: 5'- cGCUCgGCcUUGGcGAUGCCCUGGGu -3' miRNA: 3'- aCGAGaUGaAGUCcCUACGGGGCCUc -5' |
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9765 | 3' | -56.8 | NC_002577.1 | + | 160036 | 0.66 | 0.894786 |
Target: 5'- cGCUCgGCcUUGGcGAUGCCCUGGGu -3' miRNA: 3'- aCGAGaUGaAGUCcCUACGGGGCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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