Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9765 | 5' | -60.8 | NC_002577.1 | + | 8383 | 0.66 | 0.709173 |
Target: 5'- cUCCGCCGuuc-GCCCG-GCCgAGCGCc -3' miRNA: 3'- cAGGCGGCucucCGGGCuUGG-UCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 125231 | 0.66 | 0.709173 |
Target: 5'- cUCCGCCGuuc-GCCCG-GCCgAGCGCc -3' miRNA: 3'- cAGGCGGCucucCGGGCuUGG-UCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 150291 | 0.66 | 0.709173 |
Target: 5'- aUCUGuaGAuGAGGCCCGu-CCuGCGCu -3' miRNA: 3'- cAGGCggCU-CUCCGGGCuuGGuCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 10011 | 0.66 | 0.718824 |
Target: 5'- uUCCGCCuc---GUCCaGAGCCAGCGCg -3' miRNA: 3'- cAGGCGGcucucCGGG-CUUGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 123602 | 0.66 | 0.718824 |
Target: 5'- uUCCGCCuc---GUCCaGAGCCAGCGCg -3' miRNA: 3'- cAGGCGGcucucCGGG-CUUGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 122498 | 0.66 | 0.718824 |
Target: 5'- -cCCGCuuccCGAuuGGCCCGGACgGGCGu -3' miRNA: 3'- caGGCG----GCUcuCCGGGCUUGgUCGUg -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 11115 | 0.66 | 0.718824 |
Target: 5'- -cCCGCuuccCGAuuGGCCCGGACgGGCGu -3' miRNA: 3'- caGGCG----GCUcuCCGGGCUUGgUCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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