Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9765 | 5' | -60.8 | NC_002577.1 | + | 150291 | 0.66 | 0.709173 |
Target: 5'- aUCUGuaGAuGAGGCCCGu-CCuGCGCu -3' miRNA: 3'- cAGGCggCU-CUCCGGGCuuGGuCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 153580 | 0.67 | 0.671021 |
Target: 5'- -gCUGCCccguuuaggcaaacGGGGCCCG-GCCGGCGCg -3' miRNA: 3'- caGGCGGcu------------CUCCGGGCuUGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 156258 | 0.67 | 0.650261 |
Target: 5'- --aUGCCGAaaGGGGCUCGugcGCCGGCAa -3' miRNA: 3'- cagGCGGCU--CUCCGGGCu--UGGUCGUg -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 159180 | 1.07 | 0.001383 |
Target: 5'- uGUCCGCCGAGAGGCCCGAACCAGCACc -3' miRNA: 3'- -CAGGCGGCUCUCCGGGCUUGGUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 160122 | 0.66 | 0.69946 |
Target: 5'- -cCCG-CGAGaAGGCCCGAcgGCUgcaacgcguGGCGCg -3' miRNA: 3'- caGGCgGCUC-UCCGGGCU--UGG---------UCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 160361 | 0.69 | 0.503971 |
Target: 5'- cGUCCGCguuUGGGaAGGuCCCGGACaGGCGCc -3' miRNA: 3'- -CAGGCG---GCUC-UCC-GGGCUUGgUCGUG- -5' |
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9765 | 5' | -60.8 | NC_002577.1 | + | 161113 | 0.74 | 0.300462 |
Target: 5'- gGUCCcCCGGGGGGCgagCCGGgcGCCGGUACg -3' miRNA: 3'- -CAGGcGGCUCUCCG---GGCU--UGGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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