Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9765 | 5' | -60.8 | NC_002577.1 | + | 15414 | 0.7 | 0.485376 |
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Target: 5'- aUCUGCCGuGGccGCCCGAccggguGCUAGCGCa -3' miRNA: 3'- cAGGCGGC-UCucCGGGCU------UGGUCGUG- -5' |
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| 9765 | 5' | -60.8 | NC_002577.1 | + | 27936 | 0.69 | 0.551703 |
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Target: 5'- uUUgGCCGucuuGcAGG-CCGGACCAGCACg -3' miRNA: 3'- cAGgCGGCu---C-UCCgGGCUUGGUCGUG- -5' |
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| 9765 | 5' | -60.8 | NC_002577.1 | + | 125873 | 0.68 | 0.571193 |
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Target: 5'- cUCCGCCGAcucgccGAccGCCCGGaacGCCGGUACu -3' miRNA: 3'- cAGGCGGCU------CUc-CGGGCU---UGGUCGUG- -5' |
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| 9765 | 5' | -60.8 | NC_002577.1 | + | 128764 | 0.68 | 0.590844 |
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Target: 5'- -aCCGCCGAGGGG---GGACaCGGCGCg -3' miRNA: 3'- caGGCGGCUCUCCgggCUUG-GUCGUG- -5' |
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| 9765 | 5' | -60.8 | NC_002577.1 | + | 122237 | 0.68 | 0.610607 |
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Target: 5'- -cCCGUCGGGAGcgauCCCGGAUCGGaCGCc -3' miRNA: 3'- caGGCGGCUCUCc---GGGCUUGGUC-GUG- -5' |
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| 9765 | 5' | -60.8 | NC_002577.1 | + | 122319 | 0.67 | 0.640349 |
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Target: 5'- cUCCGCUuAGAGcGCCgGu-CCGGCGCu -3' miRNA: 3'- cAGGCGGcUCUC-CGGgCuuGGUCGUG- -5' |
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| 9765 | 5' | -60.8 | NC_002577.1 | + | 122498 | 0.66 | 0.718824 |
|
Target: 5'- -cCCGCuuccCGAuuGGCCCGGACgGGCGu -3' miRNA: 3'- caGGCG----GCUcuCCGGGCUUGgUCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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