Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9766 | 3' | -66.4 | NC_002577.1 | + | 163202 | 0.67 | 0.432874 |
Target: 5'- -cUGgCCGCGCggagccgCCGGCGGuCGGCGgucuaaCGCu -3' miRNA: 3'- ucAUgGGCGCG-------GGCCGCC-GCCGC------GCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 138268 | 0.67 | 0.425467 |
Target: 5'- cGGUGaUgGCGCCCgccGGCcGCGGCcGCGCc -3' miRNA: 3'- -UCAUgGgCGCGGG---CCGcCGCCG-CGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 55403 | 0.67 | 0.425467 |
Target: 5'- --cGCCC-CGUCCGGaaaauacgaaCGG-GGCGCGCu -3' miRNA: 3'- ucaUGGGcGCGGGCC----------GCCgCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 159070 | 0.67 | 0.425467 |
Target: 5'- cGGUGaUgGCGCCCgccGGCcGCGGCcGCGCc -3' miRNA: 3'- -UCAUgGgCGCGGG---CCGcCGCCG-CGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 157120 | 0.67 | 0.417326 |
Target: 5'- --aGCCCGCGCCCcuGGUacGGgGGCcccCGCc -3' miRNA: 3'- ucaUGGGCGCGGG--CCG--CCgCCGc--GCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 58373 | 0.67 | 0.417326 |
Target: 5'- -aUAUCCGCGCCUGcauCGuCGGCGCGa -3' miRNA: 3'- ucAUGGGCGCGGGCc--GCcGCCGCGCg -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 140218 | 0.67 | 0.417326 |
Target: 5'- --aGCCCGCGCCCcuGGUacGGgGGCcccCGCc -3' miRNA: 3'- ucaUGGGCGCGGG--CCG--CCgCCGc--GCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 10946 | 0.67 | 0.401332 |
Target: 5'- cGGU-CCCGCGCUuuCGGaCGGCGG-GCcgGCc -3' miRNA: 3'- -UCAuGGGCGCGG--GCC-GCCGCCgCG--CG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 121760 | 0.67 | 0.401332 |
Target: 5'- ---cUCgGCGUCCGGaGG-GGCGCGCg -3' miRNA: 3'- ucauGGgCGCGGGCCgCCgCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 82311 | 0.67 | 0.401332 |
Target: 5'- -uUGCCCuaGUagCGGCGcguaGUGGCGCGCa -3' miRNA: 3'- ucAUGGGcgCGg-GCCGC----CGCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 122668 | 0.67 | 0.401332 |
Target: 5'- cGGU-CCCGCGCUuuCGGaCGGCGG-GCcgGCc -3' miRNA: 3'- -UCAuGGGCGCGG--GCC-GCCGCCgCG--CG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 11853 | 0.67 | 0.401332 |
Target: 5'- ---cUCgGCGUCCGGaGG-GGCGCGCg -3' miRNA: 3'- ucauGGgCGCGGGCCgCCgCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 60209 | 0.68 | 0.393483 |
Target: 5'- --aGCCCauGgGUUCGGCGGCGGCcucGgGCg -3' miRNA: 3'- ucaUGGG--CgCGGGCCGCCGCCG---CgCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 121550 | 0.68 | 0.385735 |
Target: 5'- --cGCUuuCG-GCCCGGaggaGGCGGCGgGCa -3' miRNA: 3'- ucaUGG--GCgCGGGCCg---CCGCCGCgCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 141535 | 0.68 | 0.370542 |
Target: 5'- cAGUGCUgccggCGuCGCCaCGGuUGGacCGGCGCGCg -3' miRNA: 3'- -UCAUGG-----GC-GCGG-GCC-GCC--GCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 155802 | 0.68 | 0.370542 |
Target: 5'- cAGUGCUgccggCGuCGCCaCGGuUGGacCGGCGCGCg -3' miRNA: 3'- -UCAUGG-----GC-GCGG-GCC-GCC--GCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 4614 | 0.68 | 0.363101 |
Target: 5'- gGGUACgCGCGCCgaguaUGG-GG-GGCGCGUg -3' miRNA: 3'- -UCAUGgGCGCGG-----GCCgCCgCCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 137225 | 0.68 | 0.355764 |
Target: 5'- cGGUAcgauCCCGCgagaagGCCCGaCGGCugcaacgcguGGCGCGCc -3' miRNA: 3'- -UCAU----GGGCG------CGGGCcGCCG----------CCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 160113 | 0.68 | 0.355764 |
Target: 5'- cGGUAcgauCCCGCgagaagGCCCGaCGGCugcaacgcguGGCGCGCc -3' miRNA: 3'- -UCAU----GGGCG------CGGGCcGCCG----------CCGCGCG- -5' |
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9766 | 3' | -66.4 | NC_002577.1 | + | 121776 | 0.69 | 0.334384 |
Target: 5'- --cGCCUGC-UCCGGCGcGcCGaGCGCGCg -3' miRNA: 3'- ucaUGGGCGcGGGCCGC-C-GC-CGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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