miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9766 5' -58.3 NC_002577.1 + 134114 0.66 0.818501
Target:  5'- -cGCGCGGCGGACC-CuGGCCa---- -3'
miRNA:   3'- uuCGUGCCGUCUGGuGcUCGGcgaac -5'
9766 5' -58.3 NC_002577.1 + 163214 0.66 0.818501
Target:  5'- -cGCGCGGCGGACC-CuGGCCa---- -3'
miRNA:   3'- uuCGUGCCGUCUGGuGcUCGGcgaac -5'
9766 5' -58.3 NC_002577.1 + 73816 0.66 0.809831
Target:  5'- cAGUACGauGGGCCAUG-GCCGCUg- -3'
miRNA:   3'- uUCGUGCcgUCUGGUGCuCGGCGAac -5'
9766 5' -58.3 NC_002577.1 + 128827 0.66 0.809831
Target:  5'- cGGCGCGGCGucgUCGCGcGCCGCg-- -3'
miRNA:   3'- uUCGUGCCGUcu-GGUGCuCGGCGaac -5'
9766 5' -58.3 NC_002577.1 + 4786 0.66 0.809831
Target:  5'- cGGCGCGGCGucgUCGCGcGCCGCg-- -3'
miRNA:   3'- uUCGUGCCGUcu-GGUGCuCGGCGaac -5'
9766 5' -58.3 NC_002577.1 + 26216 0.66 0.801001
Target:  5'- --uCACGGCuuugGGACUACGGGCgGCa-- -3'
miRNA:   3'- uucGUGCCG----UCUGGUGCUCGgCGaac -5'
9766 5' -58.3 NC_002577.1 + 125448 0.67 0.753789
Target:  5'- -uGCGCGGuCGGAUCGCGAGguuaacucccugcCCGCg-- -3'
miRNA:   3'- uuCGUGCC-GUCUGGUGCUC-------------GGCGaac -5'
9766 5' -58.3 NC_002577.1 + 8166 0.67 0.753789
Target:  5'- -uGCGCGGuCGGAUCGCGAGguuaacucccugcCCGCg-- -3'
miRNA:   3'- uuCGUGCC-GUCUGGUGCUC-------------GGCGaac -5'
9766 5' -58.3 NC_002577.1 + 138469 0.67 0.725632
Target:  5'- gGAGgACGGCGcGGCCGCG-GCCGg--- -3'
miRNA:   3'- -UUCgUGCCGU-CUGGUGCuCGGCgaac -5'
9766 5' -58.3 NC_002577.1 + 158868 0.67 0.725632
Target:  5'- gGAGgACGGCGcGGCCGCG-GCCGg--- -3'
miRNA:   3'- -UUCgUGCCGU-CUGGUGCuCGGCgaac -5'
9766 5' -58.3 NC_002577.1 + 163028 0.68 0.695798
Target:  5'- -cGCGCGGCcaguAGGCC--GAGCCGCa-- -3'
miRNA:   3'- uuCGUGCCG----UCUGGugCUCGGCGaac -5'
9766 5' -58.3 NC_002577.1 + 134300 0.68 0.695798
Target:  5'- -cGCGCGGCcaguAGGCC--GAGCCGCa-- -3'
miRNA:   3'- uuCGUGCCG----UCUGGugCUCGGCGaac -5'
9766 5' -58.3 NC_002577.1 + 7840 0.68 0.665488
Target:  5'- -uGCGCGGCGGACaUACGcAGuuGCg-- -3'
miRNA:   3'- uuCGUGCCGUCUG-GUGC-UCggCGaac -5'
9766 5' -58.3 NC_002577.1 + 125774 0.68 0.665488
Target:  5'- -uGCGCGGCGGACaUACGcAGuuGCg-- -3'
miRNA:   3'- uuCGUGCCGUCUG-GUGC-UCggCGaac -5'
9766 5' -58.3 NC_002577.1 + 154748 0.69 0.645132
Target:  5'- cGAGCAguucguUGGCGuGGCCACGAGCUcuGUUUGc -3'
miRNA:   3'- -UUCGU------GCCGU-CUGGUGCUCGG--CGAAC- -5'
9766 5' -58.3 NC_002577.1 + 226 0.72 0.439405
Target:  5'- gGGGUGCGGCAGcCCGCGGGCUGa--- -3'
miRNA:   3'- -UUCGUGCCGUCuGGUGCUCGGCgaac -5'
9766 5' -58.3 NC_002577.1 + 133388 0.72 0.439405
Target:  5'- gGGGUGCGGCAGcCCGCGGGCUGa--- -3'
miRNA:   3'- -UUCGUGCCGUCuGGUGCUCGGCgaac -5'
9766 5' -58.3 NC_002577.1 + 42434 0.73 0.412902
Target:  5'- -cGCGCGGguGACgACG-GCCGCa-- -3'
miRNA:   3'- uuCGUGCCguCUGgUGCuCGGCGaac -5'
9766 5' -58.3 NC_002577.1 + 163164 0.75 0.317392
Target:  5'- -cGCGCGGCGGACCcuaGCGAGCaUGCg-- -3'
miRNA:   3'- uuCGUGCCGUCUGG---UGCUCG-GCGaac -5'
9766 5' -58.3 NC_002577.1 + 134139 0.75 0.317392
Target:  5'- -cGCGCGGCGGACCcuaGCGAGCaUGCg-- -3'
miRNA:   3'- uuCGUGCCGUCUGG---UGCUCG-GCGaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.